STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI07958.1Putative spermidine/putrescine transport system permease protein. (265 aa)    
Predicted Functional Partners:
SEI07947.1
Putative spermidine/putrescine transport system permease protein.
 
  0.996
SEI07925.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
  0.982
SEI07936.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
 
    0.955
SEI07969.1
Putative spermidine/putrescine transport system ATP-binding protein.
 
 
 0.948
SEH61897.1
Putative spermidine/putrescine transport system permease protein.
 
 
 0.888
potH
Putrescine transport system permease protein.
 
 
 0.871
SEH61882.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
 
 0.829
SEH57228.1
Spermidine/putrescine transport system substrate-binding protein.
 
 
 0.754
potF
Putrescine transport system substrate-binding protein.
 
 
 0.747
potF-2
Putrescine transport system substrate-binding protein.
 
 
 0.746
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.