STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yadG-2ABC-2 type transport system ATP-binding protein. (309 aa)    
Predicted Functional Partners:
SEI08431.1
ABC-2 type transport system permease protein.
 
 0.977
SEH67109.1
Cu-processing system permease protein.
  
 0.905
yadH
ABC-2 type transport system permease protein.
 
 0.877
ccmB-2
ABC-2 type transport system permease protein.
  
 0.811
SEI04145.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 0.809
cysNC
Bifunctional enzyme CysN/CysC; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
 0.719
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.673
atpA
F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.665
SEH67067.1
Nitrous oxidase accessory protein.
 
 
 0.649
atpC
ATP synthase F1 subcomplex epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
   0.642
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
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