Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DnaQ | dapE | CHUV0807_1805 | CHUV0807_1010 | DNA polymerase III epsilon subunit. | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.489 |
| artM | artQ | CHUV0807_1005 | CHUV0807_1006 | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1). | Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1). | 0.896 |
| artM | dapE | CHUV0807_1005 | CHUV0807_1010 | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1). | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.535 |
| artM | guaB | CHUV0807_1005 | CHUV0807_1004 | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1). | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.468 |
| artM | hisJ | CHUV0807_1005 | CHUV0807_1007 | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1). | Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1); Belongs to the bacterial solute-binding protein 3 family. | 0.971 |
| artM | hisJ2 | CHUV0807_1005 | CHUV0807_1008 | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1). | Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1); Belongs to the bacterial solute-binding protein 3 family. | 0.967 |
| artM | hisP | CHUV0807_1005 | CHUV0807_1009 | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1). | Arginine/ornithine ABC transporter, ATP-binding protein AotP. | 0.976 |
| artQ | artM | CHUV0807_1006 | CHUV0807_1005 | Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1). | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1). | 0.896 |
| artQ | dapE | CHUV0807_1006 | CHUV0807_1010 | Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1). | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.527 |
| artQ | guaB | CHUV0807_1006 | CHUV0807_1004 | Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1). | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.468 |
| artQ | hisJ | CHUV0807_1006 | CHUV0807_1007 | Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1). | Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1); Belongs to the bacterial solute-binding protein 3 family. | 0.986 |
| artQ | hisJ2 | CHUV0807_1006 | CHUV0807_1008 | Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1). | Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1); Belongs to the bacterial solute-binding protein 3 family. | 0.979 |
| artQ | hisP | CHUV0807_1006 | CHUV0807_1009 | Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1). | Arginine/ornithine ABC transporter, ATP-binding protein AotP. | 0.948 |
| dapD | dapE | CHUV0807_0298 | CHUV0807_1010 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family. | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.568 |
| dapD | dapF | CHUV0807_0298 | CHUV0807_0251 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.440 |
| dapE | DnaQ | CHUV0807_1010 | CHUV0807_1805 | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | DNA polymerase III epsilon subunit. | 0.489 |
| dapE | artM | CHUV0807_1010 | CHUV0807_1005 | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1). | 0.535 |
| dapE | artQ | CHUV0807_1010 | CHUV0807_1006 | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1). | 0.527 |
| dapE | dapD | CHUV0807_1010 | CHUV0807_0298 | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family. | 0.568 |
| dapE | dapF | CHUV0807_1010 | CHUV0807_0251 | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.933 |
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