STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAM64990.1Type IV fimbrial biogenesis protein PilY1. (1128 aa)    
Predicted Functional Partners:
SAM64997.1
Hypothetical protein.
 
  
 0.794
fimV
Alginate regulatory protein AlgP.
  
     0.549
SAM57202.1
Putative periplasmic protein.
  
     0.526
SAM68607.1
Uncharacterized protein with LysM domain, COG1652.
  
     0.483
SAM66507.1
Type IV pilus biogenesis protein PilZ.
  
   
 0.478
SAM72366.1
FIG002343: hypothetical protein.
  
     0.468
SAM61352.1
Type IV pilus biogenesis protein PilN.
 
  
 0.444
SAM64477.1
Excinuclease ATPase subunit.
  
     0.438
PilQ
Type IV pilus biogenesis protein PilQ; Belongs to the bacterial secretin family.
 
   
 0.435
PrpE
Protein serine-threonine phosphatase.
  
     0.425
Your Current Organism:
Cardiobacterium hominis
NCBI taxonomy Id: 2718
Other names: ATCC 15826, C. hominis, CCUG 2711, CIP 70.70, DSM 8339, LMG 3916, LMG:3916, NCTC 10426
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