STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcaJCapsular polysaccharide biosynthesis protein. (463 aa)    
Predicted Functional Partners:
GlfT1
Putative glycosyl transferase.
  
  
 0.852
glf
UDP-galactopyranose mutase.
     
 0.823
rfbB2
O-antigen/lipopolysaccharide transport ATP-binding protein ABC transporter RfbE.
     
 0.822
rfbD2
O-antigen export system permease protein RfbD.
     
 0.821
GlfT2
Ketol-acid reductoisomerase.
  
  
 0.666
galE
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
   
 0.657
SAZ05171.1
O-antigen ligase.
  
  
 0.623
SAM58118.1
Glycosyltransferase.
 
  
 0.579
waaE
Glycosyl transferase, group 2 family protein.
 
  
 0.526
YlxH
Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.523
Your Current Organism:
Cardiobacterium hominis
NCBI taxonomy Id: 2718
Other names: ATCC 15826, C. hominis, CCUG 2711, CIP 70.70, DSM 8339, LMG 3916, LMG:3916, NCTC 10426
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