STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ56751.1Helix-turn-helix domain protein; PFAM: Helix-turn-helix; InterPro IPR001387; KEGG: npu:Npun_CR034 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family. (153 aa)    
Predicted Functional Partners:
AFZ56752.1
PFAM: Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: npu:Npun_CF035 phage integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Phage integrase family protein; Belongs to the 'phage' integrase family.
  
  
 0.581
AFZ56761.1
COGs: COG4185 conserved hypothetical protein; KEGG: cyt:cce_5275 hypothetical protein; SPTR: Putative uncharacterized protein.
    
 
 0.560
AFZ56750.1
Transposase Tn3 family protein; PFAM: Transposase; COGs: COG4644 Transposase and inactivated derivatives TnpA family; InterPro IPR002513; KEGG: npu:Npun_CR033 transposase Tn3 family protein; PFAM: Transposase, Tn3; SPTR: Transposase Tn3 family protein.
       0.547
Your Current Organism:
Anabaena cylindrica
NCBI taxonomy Id: 272123
Other names: A. cylindrica PCC 7122, Anabaena cylindrica IAM M-1, Anabaena cylindrica NIES-19, Anabaena cylindrica PCC 7122, Anabaena cylindrica UTEX B 629, Anabaena sp. ATCC 27899, Anabaena sp. PCC 7122
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