Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APE_0004Hypothetical protein. (304 aa)    
Predicted Functional Partners:
APE_0002
Putative transcriptional regulator, PadR family.
  
    0.788
APE_0001
Hypothetical protein.
       0.773
APE_0084.1
NADH dehydrogenase.
  
  
 0.581
APE_0492.1
Conserved hypothetical protein.
  
  
 0.581
APE_1044
NADH dehydrogenase.
  
  
 0.581
APE_1550.1
ABC transporter, permease protein.
  
  
 0.550
APE_1827.1
Conserved hypothetical protein.
  
  
 0.550
APE_1828.1
Conserved hypothetical protein.
  
  
 0.550
APE_2512
ABC transporter, permease protein.
  
  
 0.550
APE_2514
ABC transporter, permease protein.
  
  
 0.550
Your Current Organism:
Aeropyrum pernix
NCBI taxonomy Id: 272557
Other names: A. pernix K1, Aeropyrum pernix K1, Aeropyrum pernix str. K1, Aeropyrum pernix strain K1
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