Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
livGBranched-chain amino acid ABC transporter, ATP binding protein. (254 aa)    
Predicted Functional Partners:
livH
Branched-chain amino acid ABC transporter, permease protein.
 
 
 0.996
livM
Branched-chain amino acid ABC transporter, permease protein.
 
 
 0.996
livM-2
Branched-chain amino acid ABC transporter, permease protein.
 
 0.996
APE_1304.1
ABC transporter, permease protein.
 
 0.995
livK
Branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein precursor.
 
 
 0.988
livH-2
Branched-chain amino acid ABC transporter, permease protein.
 
 0.970
APE_1305
ABC transporter, permease protein.
 
 
 0.965
livF
Branched-chain amino acid ABC transporter, ATP binding protein.
 
  
0.959
livK-2
Branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein precursor.
 
 
 0.939
APE_1303.1
ABC transporter, substrate binding protein.
  
 
 0.916
Your Current Organism:
Aeropyrum pernix
NCBI taxonomy Id: 272557
Other names: A. pernix K1, Aeropyrum pernix K1, Aeropyrum pernix str. K1, Aeropyrum pernix strain K1
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