Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
APE_0941Spermidine/putrescine ABC transporter, permease protein. (267 aa)    
Predicted Functional Partners:
APE_0943
Spermidine/putrescine ABC transporter, permease protein.
 
0.999
APE_0945.1
Spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein precursor.
 0.999
APE_0944.1
Spermidine/putrescine ABC transporter, ATP binding protein.
 
 0.977
APE_0940
Hypothetical protein.
  
    0.710
APE_0939
Hypothetical protein; Belongs to the UPF0248 family.
       0.645
APE_0938.1
Hypothetical protein.
       0.636
APE_2154b
Hypothetical protein.
   
  
 0.584
APE_2406.1
Conserved hypothetical protein.
   
  
 0.584
APE_2408.1
Conserved hypothetical protein.
   
  
 0.533
APE_0935
Hypothetical protein.
     
 0.496
Your Current Organism:
Aeropyrum pernix
NCBI taxonomy Id: 272557
Other names: A. pernix K1, Aeropyrum pernix K1, Aeropyrum pernix str. K1, Aeropyrum pernix strain K1
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