Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APE_1192Glycosyl transferase, family 2. (290 aa)    
Predicted Functional Partners:
APE_1191
Glycosyl transferase, group 1.
 
 
 0.924
APE_1184
Glycosyl transferase, family 2.
 
  
 0.653
APE_1188
Glycosyl transferase, group 1.
  
 
 0.606
APE_2066.1
Glycosyl transferase, group 1.
 
 
 0.599
APE_1189.1
Glycosyl transferase, family 2.
 
   
 0.579
APE_1186.1
Hypothetical protein.
  
 
 0.561
APE_1193.1
Hypothetical protein.
       0.538
APE_1190.1
Hypothetical protein.
   
 
 0.536
APE_1528.1
Hypothetical protein.
 
 
 0.497
rfbB
dTDP-glucose 4,6-dehydratase; RmlB.
 
  
 0.411
Your Current Organism:
Aeropyrum pernix
NCBI taxonomy Id: 272557
Other names: A. pernix K1, Aeropyrum pernix K1, Aeropyrum pernix str. K1, Aeropyrum pernix strain K1
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