STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mscSSmall conductance mechanosensitive channel MscS. (280 aa)    
Predicted Functional Partners:
APE_1442
Conserved hypothetical protein.
       0.826
APE_1440a
Hypothetical protein.
       0.773
APE_1443.1
Conserved hypothetical protein; Probably involved in the biogenesis of the ribosome.
       0.762
APE_1437.1
Conserved hypothetical protein.
       0.707
APE_1437a
Hypothetical protein.
       0.697
pfdB
Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding (By similarity).
       0.697
APE_0748.1
Conserved hypothetical protein.
   
    0.646
APE_2334.1
Conserved hypothetical protein.
   
    0.646
APE_1436.1
Repair endonuclease XPF.
  
    0.497
rpl37ae
50S ribosomal protein L37Ae; Binds to the 23S rRNA.
       0.452
Your Current Organism:
Aeropyrum pernix
NCBI taxonomy Id: 272557
Other names: A. pernix K1, Aeropyrum pernix K1, Aeropyrum pernix str. K1, Aeropyrum pernix strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.