Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
APE_1576Oligopeptide ABC transporter, ATP binding protein. (377 aa)    
Predicted Functional Partners:
APE_1581.1
Oligopeptide ABC transporter, permease protein.
 
 0.984
APE_1396
ABC transporter, permease protein.
 
 0.964
APE_1578
Oligopeptide ABC transporter, ATP binding protein.
 
  
0.958
APE_0302.1
ABC transporter, permease protein.
 
 0.955
dppC
Dipeptide ABC transporter, permease protein DppC.
 
 0.949
APE_1582
Oligopeptide ABC transporter, permease protein.
 
 
 0.879
APE_1574a
Hypothetical protein.
       0.675
APE_0301.1
ABC transporter, ATP binding protein.
  
   0.633
APE_1399
ABC transporter, ATP binding protein.
  
   0.633
dppD
Dipeptide ABC transporter, ATP-binding protein DppD.
  
   0.633
Your Current Organism:
Aeropyrum pernix
NCBI taxonomy Id: 272557
Other names: A. pernix K1, Aeropyrum pernix K1, Aeropyrum pernix str. K1, Aeropyrum pernix strain K1
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