Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
APE_1728ABC transporter, substrate binding protein. (517 aa)    
Predicted Functional Partners:
APE_1730.1
ABC transporter, permease protein.
 
 
 0.998
APE_1732
ABC transporter, ATP binding protein.
 
  
  0.963
APE_1727.1
Conserved hypothetical protein.
       0.623
APE_0966.1
Hypothetical protein.
 
     0.597
oppA
Oligopeptide ABC transporter, oligopeptide binding protein.
  
     0.523
APE_0534.1
ABC transporter, permease protein.
 
  
 0.466
APE_0969.1
Hypothetical protein.
     
 0.449
APE_0785.1
Conserved hypothetical protein.
 
     0.444
APE_2423
Aspartate aminotransferase.
  
  
 0.442
soxC
Cytochrome b.
       0.416
Your Current Organism:
Aeropyrum pernix
NCBI taxonomy Id: 272557
Other names: A. pernix K1, Aeropyrum pernix K1, Aeropyrum pernix str. K1, Aeropyrum pernix strain K1
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