APE_1892 protein (Aeropyrum pernix) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

APE_1892

ABC transporter, permease protein. (220 aa)

Predicted Functional Partners:

APE_1891.1

0.999

APE_1893.1

0.996

pstB

0.864

APE_1635.1

0.768

APE_1732

0.728

APE_0944.1

0.701

APE_0043.1

0.698

APE_1253

0.697

APE_2060.1

0.621

livG

0.613

Your Current Organism:

Aeropyrum pernix

NCBI taxonomy Id: 272557
Other names: A. pernix K1, Aeropyrum pernix K1, Aeropyrum pernix str. K1, Aeropyrum pernix strain K1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE_0043.1	APE_0944.1	APE_0043.1	APE_0944.1	ABC transporter, ATP binding protein.	Spermidine/putrescine ABC transporter, ATP binding protein.	0.433
APE_0043.1	APE_1635.1	APE_0043.1	APE_1635.1	ABC transporter, ATP binding protein.	ABC transporter, ATP binding protein.	0.903
APE_0043.1	APE_1732	APE_0043.1	APE_1732	ABC transporter, ATP binding protein.	ABC transporter, ATP binding protein.	0.560
APE_0043.1	APE_1892	APE_0043.1	APE_1892	ABC transporter, ATP binding protein.	ABC transporter, permease protein.	0.698
APE_0043.1	APE_2060.1	APE_0043.1	APE_2060.1	ABC transporter, ATP binding protein.	ABC transporter, ATP binding protein.	0.559
APE_0043.1	pstB	APE_0043.1	APE_0050	ABC transporter, ATP binding protein.	Phosphate ABC transporter, ATP binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.453
APE_0944.1	APE_0043.1	APE_0944.1	APE_0043.1	Spermidine/putrescine ABC transporter, ATP binding protein.	ABC transporter, ATP binding protein.	0.433
APE_0944.1	APE_1635.1	APE_0944.1	APE_1635.1	Spermidine/putrescine ABC transporter, ATP binding protein.	ABC transporter, ATP binding protein.	0.426
APE_0944.1	APE_1732	APE_0944.1	APE_1732	Spermidine/putrescine ABC transporter, ATP binding protein.	ABC transporter, ATP binding protein.	0.433
APE_0944.1	APE_1892	APE_0944.1	APE_1892	Spermidine/putrescine ABC transporter, ATP binding protein.	ABC transporter, permease protein.	0.701
APE_0944.1	APE_2060.1	APE_0944.1	APE_2060.1	Spermidine/putrescine ABC transporter, ATP binding protein.	ABC transporter, ATP binding protein.	0.428
APE_1253	APE_1892	APE_1253	APE_1892	Conserved hypothetical protein.	ABC transporter, permease protein.	0.697
APE_1635.1	APE_0043.1	APE_1635.1	APE_0043.1	ABC transporter, ATP binding protein.	ABC transporter, ATP binding protein.	0.903
APE_1635.1	APE_0944.1	APE_1635.1	APE_0944.1	ABC transporter, ATP binding protein.	Spermidine/putrescine ABC transporter, ATP binding protein.	0.426
APE_1635.1	APE_1732	APE_1635.1	APE_1732	ABC transporter, ATP binding protein.	ABC transporter, ATP binding protein.	0.551
APE_1635.1	APE_1892	APE_1635.1	APE_1892	ABC transporter, ATP binding protein.	ABC transporter, permease protein.	0.768
APE_1635.1	APE_2060.1	APE_1635.1	APE_2060.1	ABC transporter, ATP binding protein.	ABC transporter, ATP binding protein.	0.556
APE_1732	APE_0043.1	APE_1732	APE_0043.1	ABC transporter, ATP binding protein.	ABC transporter, ATP binding protein.	0.560
APE_1732	APE_0944.1	APE_1732	APE_0944.1	ABC transporter, ATP binding protein.	Spermidine/putrescine ABC transporter, ATP binding protein.	0.433
APE_1732	APE_1635.1	APE_1732	APE_1635.1	ABC transporter, ATP binding protein.	ABC transporter, ATP binding protein.	0.551