Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APE_1899Hypothetical protein. (182 aa)    
Predicted Functional Partners:
APE_1901
Hypothetical protein.
  
 
 0.992
APE_1895.1
Archaeal flagellar protein J homolog.
  
  
 0.949
APE_1898
Archaeal flagellar protein H homolog.
  
  
 0.945
APE_1896.1
Archaeal flagellar protein I homolog.
  
  
 0.897
APE_1902.1
Hypothetical protein.
       0.800
flaB1
Flagellin homolog; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
  
  
 0.791
flaB2
Flagellin homolog; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
  
  
 0.778
APE_0695.1
Conserved hypothetical protein.
  
  
 0.614
APE_2208.1
Protein kinase.
  
  
 0.614
Your Current Organism:
Aeropyrum pernix
NCBI taxonomy Id: 272557
Other names: A. pernix K1, Aeropyrum pernix K1, Aeropyrum pernix str. K1, Aeropyrum pernix strain K1
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