Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dppADipeptide ABC transporter, dipeptide-binding protein DppA. (515 aa)    
Predicted Functional Partners:
APE_0303
ABC transporter, permease protein.
 
 0.976
APE_1395.1
ABC transporter, permease protein.
 
 0.974
dppB
Dipeptide ABC transporter, permease protein DppB.
 
 0.969
dppC
Dipeptide ABC transporter, permease protein DppC.
 
 0.955
APE_0302.1
ABC transporter, permease protein.
 
 0.900
APE_1396
ABC transporter, permease protein.
 
 0.872
APE_1582
Oligopeptide ABC transporter, permease protein.
  
 
 0.771
APE_1581.1
Oligopeptide ABC transporter, permease protein.
 
 
 0.755
dppD
Dipeptide ABC transporter, ATP-binding protein DppD.
  
 
 0.754
dppF
Dipeptide ABC transporter, ATP-binding protein DppF.
  
 
 0.678
Your Current Organism:
Aeropyrum pernix
NCBI taxonomy Id: 272557
Other names: A. pernix K1, Aeropyrum pernix K1, Aeropyrum pernix str. K1, Aeropyrum pernix strain K1
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