STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APE_2474.1Cell division control protein 48, AAA family; ATPase of the AAA+ family; CDC48. (737 aa)    
Predicted Functional Partners:
rpl40e
50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 0.717
APE_2473a
Hypothetical protein.
       0.699
APE_0791.1
Putative ATP/GTP-binding protein.
   
 0.687
APE_1950.1
Small heat shock protein; Belongs to the small heat shock protein (HSP20) family.
 
  
 0.679
APE_0306.1
Putative carbohydrate kinase.
  
  0.674
APE_0092.1
Conserved hypothetical protein.
   
 0.649
APE_1285.1
Conserved hypothetical protein.
   
 0.649
APE_0143.1
Hypothetical protein.
   
 0.629
APE_0962
Hypothetical protein.
   
 0.629
APE_1975.1
Hypothetical protein.
   
 0.629
Your Current Organism:
Aeropyrum pernix
NCBI taxonomy Id: 272557
Other names: A. pernix K1, Aeropyrum pernix K1, Aeropyrum pernix str. K1, Aeropyrum pernix strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.