STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BH0906Catalase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (735 aa)    
Predicted Functional Partners:
katB
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
    
 0.940
katX
Catalase; BH1306; Belongs to the catalase family.
    
 0.918
hisC
Histidinol-phosphate aminotransferase; BH1665; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.908
pdh
Phenylalanine dehydrogenase; BH0218; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.907
aspB
Aspartate aminotransferase; BH1695.
     
  0.900
BH2195
Aspartate aminotransferase.
     
  0.900
pheA
Prephenate dehydratase; BH1215.
     
  0.800
sodA
Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family.
    
 0.580
BH1563
Superoxide dismutase.
    
 0.580
BH3054
BH3054; unknown conserved protein in B. subtilis.
   
 
 0.409
Your Current Organism:
Bacillus halodurans
NCBI taxonomy Id: 272558
Other names: B. halodurans C-125, Bacillus halodurans C-125, Bacillus halodurans str. C-125, Bacillus halodurans strain C-125
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