STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (497 aa)    
Predicted Functional Partners:
araB
L-ribulokinase; BH1872.
 
 
 0.999
araD
L-ribulose-5-phosphate 4-epimerase; Involved in the degradation of L-arabinose. Catalyzes the interconversion of L-ribulose 5-phosphate (LRu5P) and D-xylulose 5- phosphate (D-Xu5P) via a retroaldol/aldol mechanism (carbon-carbon bond cleavage analogous to a class II aldolase reaction).
 
 
 0.992
BH1874
alpha-L-arabinosidase.
 
 
 0.976
abfA
alpha-L-arabinofuranosidase; Involved in the degradation of arabinan and is a key enzyme in the complete degradation of the plant cell wall. Catalyzes the cleavage of terminal alpha-(1->5)-arabinofuranosyl bonds in different hemicellulosic homopolysaccharides (branched and debranched arabinans) (By similarity).
 
 
 0.940
xynB
Xylan beta-1,4-xylosidase; BH3683; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.882
BH1068
Beta-xylosidase.
     
  0.800
BH2114
Beta-xylosidase (1,4-beta-D-xylan xylohydrolase).
     
  0.800
BH1877
BH1877; unknown conserved protein in others.
 
    0.782
araR
Transcriptional repressor of the arabinose operon; Transcriptional repressor of the arabinose utilization genes.
 
   
 0.760
BH1867
BH1867; unknown conserved protein; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.719
Your Current Organism:
Bacillus halodurans
NCBI taxonomy Id: 272558
Other names: B. halodurans C-125, Bacillus halodurans C-125, Bacillus halodurans str. C-125, Bacillus halodurans strain C-125
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