STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araRTranscriptional repressor of the arabinose operon; Transcriptional repressor of the arabinose utilization genes. (375 aa)    
Predicted Functional Partners:
BH1876
BH1876; unknown.
       0.773
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
   
 0.760
gltA
Glutamate synthase (large subunit); BH1728.
    
   0.726
msmR
Transcriptional regulator (AraC/XylS family); BH2227.
  
     0.726
araD
L-ribulose-5-phosphate 4-epimerase; Involved in the degradation of L-arabinose. Catalyzes the interconversion of L-ribulose 5-phosphate (LRu5P) and D-xylulose 5- phosphate (D-Xu5P) via a retroaldol/aldol mechanism (carbon-carbon bond cleavage analogous to a class II aldolase reaction).
 
  
 0.724
lacR
Transcriptional repressor (beta-galactosidase gene); BH2018.
  
     0.707
BH1877
BH1877; unknown conserved protein in others.
       0.675
araB
L-ribulokinase; BH1872.
 
  
 0.624
BH1874
alpha-L-arabinosidase.
 
     0.595
xylB
Xylose kinase; BH2756.
 
 
 
 0.567
Your Current Organism:
Bacillus halodurans
NCBI taxonomy Id: 272558
Other names: B. halodurans C-125, Bacillus halodurans C-125, Bacillus halodurans str. C-125, Bacillus halodurans strain C-125
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