STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BH0555Glycerate kinase; BH0555; unknown conserved protein. (380 aa)    
Predicted Functional Partners:
BH3314
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.925
pgm
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Essential for rapid growth and for sporulation. Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.
     
 0.913
gbsA
Glycine betaine aldehyde dehydrogenase; BH0203; Belongs to the aldehyde dehydrogenase family.
   
 
 0.903
dhaS
NADP-dependent aldehyde dehydrogenase; BH0539; Belongs to the aldehyde dehydrogenase family.
   
 
 0.903
BH0865
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.903
BH2010
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.903
BH0285
BH0285; unknown conserved protein in others.
     
 0.902
BH0033
Cu binding protein (Mn oxidation); Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
 
    0.699
BH0556
Mercuric transport system (mercuric-binding protein).
 
     0.648
gntP
Gluconate permease; BH0805.
 
  
 0.613
Your Current Organism:
Bacillus halodurans
NCBI taxonomy Id: 272558
Other names: B. halodurans C-125, Bacillus halodurans C-125, Bacillus halodurans str. C-125, Bacillus halodurans strain C-125
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