STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0175Similar to Xylella fastidiosa hypothetical protein XF1703 SWALL:Q9PCS5 (EMBL:AE003994) (102 aa) fasta scores: E(): 2e-15, 45.91% id in 98 aa, and to Haemophilus influenzae hypothetical protein HI1419 SWALL:YE19_HAEIN (SWALL:P44190) (99 aa) fasta scores: E(): 3.7e-14, 48.93% id in 94 aa. Simlar to BPSS1060, 95.690% identity (95.690% ungapped) in 116 aa overlap. (107 aa)    
Predicted Functional Partners:
BPSL0174
Putative phage DNA-binding protein; Similar to Ralstonia solanacearum hypothetical protein rsp0076 or rs05545 SWALL:Q8XTN0 (EMBL:AL646076) (99 aa) fasta scores: E(): 5.5e-10, 50% id in 88 aa, and to Xylella fastidiosa hypothetical protein XF2763 SWALL:Q9P9V8 (EMBL:AE004082) (102 aa) fasta scores: E(): 3e-11, 44.68% id in 94 aa. CDS is extended at the C-terminus in comparison to orthologues. Similar to BPSS1061, 99.153% identity (99.153% ungapped) in 118 aa overlap.
 
  
 0.955
BPSS1061
Putative DNA binding protein; Similar to Xylella fastidiosa hypothetical protein Xf2763 SWALL:Q9P9V8 (EMBL:AE004082) (102 aa) fasta scores: E(): 7.8e-11, 43.61% id in 94 aa, and to Ralstonia solanacearum hypothetical protein rsp0076 or rs05545 SWALL:Q8XTN0 (EMBL:AL646076) (99 aa) fasta scores: E(): 1.3e-10, 46.93% id in 98 aa, and to Haemophilus influenzae hypothetical protein Hi1420 SWALL:YE20_HAEIN (SWALL:P44191) (97 aa) fasta scores: E(): 3.3e-09, 45.45% id in 88 aa.
 
  
 0.812
BPSS0390
Similar to Rhizobium meliloti hypothetical protein r02039 or smc04441 SWALL:Q92K60 (EMBL:AL591789) (62 aa) fasta scores: E(): 1.9e-11, 61.01% id in 59 aa, and to Clostridium perfringens hypothetical protein pcp27 SWALL:Q93MC0 (EMBL:AP003515) (65 aa) fasta scores: E(): 6.2e-11, 53.44% id in 58 aa.
  
   
 0.725
hipA
Putative regulatory protein; Similar to Escherichia coli protein HipA or b1507 SWALL:HIPA_ECOLI (SWALL:P23874) (440 aa) fasta scores: E(): 1.1e-53, 38.82% id in 443 aa, and to Ralstonia solanacearum putative HipA transcription regulator protein hipa or rsc1446 or rs03861 SWALL:Q8XZF5 (EMBL:AL646064) (445 aa) fasta scores: E(): 9.3e-87, 52.82% id in 443 aa.
      
 0.686
BPSL2333
Similar to Escherichia coli O157:H7 hypothetical protein ecs1067 SWALL:Q8X2Z4 (EMBL:AP002554) (95 aa) fasta scores: E(): 7.4e-08, 40.96% id in 83 aa, and to Escherichia coli O157:H7 hypothetical protein ecs2281 SWALL:Q8X366 (EMBL:AP002557) (92 aa) fasta scores: E(): 1.4e-07, 43.37% id in 83 aa.
  
   
 0.584
BPSL0559
Hypothetical protein; No significant database matches to the full length CDS. C-terminal region is similar to Sinorhizobium meliloti phage PBC5 hypothetical protein Orf68 SWALL:Q8W6F9 (EMBL:AF448724) (127 aa) fasta scores: E(): 3.4, 31.53% id in 111 aa.
      
 0.574
BPSL1494
Similar to Deinococcus radiodurans transcriptional regulator, MerR family dr2306 SWALL:Q9RS21 (EMBL:AE002062) (155 aa) fasta scores: E(): 7.3e-21, 50% id in 144 aa, and to the N-terminal region of Streptomyces coelicolor putative MerR-family transcriptional regulator sco7698 or sc1a4.06C SWALL:Q9EX58 (EMBL:AL450433) (380 aa) fasta scores: E(): 4.3e-06, 37.33% id in 150 aa.
      
 0.499
BPSS0899
Putative hydrolase; Similar to Pseudomonas aeruginosa probable hydrolase pa3509 SWALL:Q9HYA0 (EMBL:AE004771) (289 aa) fasta scores: E(): 6e-33, 44.76% id in 277 aa, and to Agrobacterium tumefaciens hydrolase ATU4238 or AGR_L_1247 SWALL:Q8U861 (EMBL:AE009353) (286 aa) fasta scores: E(): 1.9e-10, 29.89% id in 291 aa.
      
 0.499
BPSS1321
Hypothetical protein; C-terminus is similar to the N-terminus of Haemophilus influenzae hypothetical protein Hi0912 hi0912 SWALL:Y912_HAEIN (SWALL:P44074) (254 aa) fasta scores: E(): 4.1e-05, 30% id in 150 aa.
      
 0.499
BPSS2196
Similar to Chlorobium tepidum type II secretion system protein ct0434 SWALL:AAM71680 (EMBL:AE012821) (480 aa) fasta scores: E(): 1.1e-92, 60.33% id in 416 aa, and to Agrobacterium tumefaciens component of type IV pilus CtpG or atu0218 or agr_c_373 SWALL:Q8UIS4 (EMBL:AE008995) (491 aa) fasta scores: E(): 4e-73, 48.49% id in 431 aa.
      
 0.499
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.