STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0234Hypothetical protein; Poor database matches. Weakly similar to Rhizobium meliloti chemotaxis protein MotD SWALL:MOTD_RHIME (SWALL:Q52964) (475 aa) fasta scores: E(): 0.13, 25.46% id in 483 aa. N-terminal region is weakly similar to Xanthomonas axonopodis hypothetical protein XAC0071 SWALL:AAM34963 (EMBL:AE011630) (346 aa) fasta scores: E(): 0.018, 29.73% id in 333 aa. (503 aa)    
Predicted Functional Partners:
FlgJ
Similar to Salmonella typhimurium peptidoglycan hydrolase FlgJ or FlaZ SWALL:FLGJ_SALTY (SWALL:P15931) (316 aa) fasta scores: E(): 3.5e-32, 43.43% id in 297 aa, and to Vibrio parahaemolyticus peptidoglycan hydrolase FlgJ SWALL:FLGJ_VIBPA (SWALL:Q9X9J3) (308 aa) fasta scores: E(): 6.9e-26, 33.97% id in 312 aa.
 
  
 0.979
fliJ
Flagellar fliJ protein; Similar to Salmonella typhimurium, and Salmonella typhi flagellar fliJ protein FliJ or FlaO or FlaS SWALL:FLIJ_SALTY (SWALL:P26463) (147 aa) fasta scores: E(): 1.9e-09, 32.85% id in 140 aa, and to Burkholderia cepacia putative flagellar chaperone FliJ SWALL:Q8VQP3 (EMBL:AF453480) (152 aa) fasta scores: E(): 1.2e-41, 80% id in 150 aa.
 
  
 0.967
fliE
Similar to Salmonella typhimurium flagellar hook-basal body complex protein FliE or FlaN SWALL:FLIE_SALTY (SWALL:P26462) (103 aa) fasta scores: E(): 8.5e-10, 43.24% id in 111 aa, and to Burkholderia cepacia flagellar hook-basal body protein FliE SWALL:Q8VQP8 (EMBL:AF453480) (114 aa) fasta scores: E(): 1.4e-27, 82.45% id in 114 aa.
 
  
 0.932
fliO
Flagellar protein; Similar to Escherichia coli flagellar protein FliO or FlbD or FlaP SWALL:FLIO_ECOLI (SWALL:P22586) (121 aa) fasta scores: E(): 1.1e-05, 43% id in 100 aa, and to Erwinia carotovora MopB protein SWALL:MOPB_ERWCA (SWALL:P34199) (140 aa) fasta scores: E(): 3.6e-05, 38.31% id in 107 aa.
 
  
 0.925
BPSL0267
Similar to Proteus mirabilis flagella synthesis protein FlgN SWALL:FLGN_PROMI (SWALL:P96975) (146 aa) fasta scores: E(): 0.078, 24.82% id in 141 aa, and to Yersinia pestis flagella synthesis protein ypo1796 SWALL:Q8ZFC1 (EMBL:AJ414150) (146 aa) fasta scores: E(): 0.00017, 28.67% id in 143 aa.
 
  
 0.923
FliL
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.918
fliS
Flagellar protein; Similar to Salmonella typhimurium flagellar protein FliS SWALL:FLIS_SALTY (SWALL:P26609) (135 aa) fasta scores: E(): 2e-19, 50% id in 132 aa, and to Ralstonia solanacearum probable flagellar protein rsp0384 or rs00812 SWALL:Q8XST3 (EMBL:AL646078) (140 aa) fasta scores: E(): 1.3e-17, 50% id in 136 aa.
 
  
 0.916
fliH
Similar to Salmonella typhimurium flagellar assembly protein FliH SWALL:FLIH_SALTY (SWALL:P15934) (235 aa) fasta scores: E(): 4.3e-16, 34.22% id in 225 aa, and to Burkholderia cepacia putative FliI inhibitor FliH SWALL:Q8VQP5 (EMBL:AF453480) (227 aa) fasta scores: E(): 3.4e-58, 78.85% id in 227 aa.
 
  
 0.914
FlgA
C-terminus is similar to the C-terminal region of Yersinia enterocolitica flagella basal body P-ring formation protein FlgA SWALL:FLGA_YEREN (SWALL:Q56892) (224 aa) fasta scores: E(): 4.7e-15, 40% id in 195 aa. Full length CDS is similar to Ralstonia solanacearum putative flagella basal body P-ring formation protein rsp0341 or rs00720 SWALL:Q8XSX6 (EMBL:AL646078) (295 aa) fasta scores: E(): 8.4e-20, 37.02% id in 289 aa. Possible alternative translational start site.
 
  
 0.912
BPSL0235
Putative export system protein; Similar to Helicobacter pylori putative member of ABC transporter family AbcB or JHP1483 SWALL:O30551 (EMBL:AF010307) (90 aa) fasta scores: E(): 1.3e-08, 41.46% id in 82 aa, and to the C-terminal region of Escherichia coli flagellar biosynthetic protein FlhB SWALL:FLHB_ECOLI (SWALL:P76299) (382 aa) fasta scores: E(): 9.2e-07, 39.8% id in 103 aa.
 
  
 0.910
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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