STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0295Putative natural resistance-associated macrophage protein; N-terminal region is similar to Pseudomonas aeruginosa manganese transport protein MntH2 SWALL:MNT2_PSEAE (SWALL:Q9RPF2) (438 aa) fasta scores: E(): 7.4e-14, 26.54% id in 437 aa. Similar to Burkholderia cepacia genomovar III natural resistance-associated macrophage protein NRAMP SWALL:Q8VP26 (EMBL:AY028431) (548 aa) fasta scores: E(): 4.1e-176, 82.24% id in 552 aa. (552 aa)    
Predicted Functional Partners:
BPSL1297
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp0114 or rs03008 SWALL:Q8XTJ4 (EMBL:AL646076) (260 aa) fasta scores: E(): 1.5e-59, 69.44% id in 252 aa, and to Streptomyces coelicolor putative integral membrane protein sco6371 or sc4a2.07 SWALL:O86663 (EMBL:AL031182) (279 aa) fasta scores: E(): 1.5e-43, 54.43% id in 237 aa.
  
     0.617
hoxN
Similar to Alcaligenes eutrophus high-affinity nickel transport protein HoxN SWALL:HOXN_ALCEU (SWALL:P23516) (351 aa) fasta scores: E(): 4.3e-78, 58.11% id in 339 aa, and to Bradyrhizobium japonicum hydrogenase nickel incorporation protein HupN SWALL:HUPN_BRAJA (SWALL:Q45247) (381 aa) fasta scores: E(): 1e-61, 54.23% id in 319 aa; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
   
 0.595
BPSL2142
Family S53 unassigned peptidase; Similar to the N-terminal region of Xanthomonas sp. xanthomonapepsin precursor SWALL:XANP_XANS2 (SWALL:Q60106) (827 aa) fasta scores: E(): 4.6e-65, 46.42% id in 644 aa, and to the full length Pseudomonas sp. pseudomonapepsin precursor Pcp SWALL:PICP_PSESR (SWALL:P42790) (587 aa) fasta scores: E(): 2.5e-24, 48.07% id in 624 aa.
  
     0.590
BPSS1734
Sedolisin; Similar to Pseudomonas sp. pseudomonapepsin precursor Pcp SWALL:PICP_PSESR (SWALL:P42790) (587 aa) fasta scores: E(): 1.1e-143, 67.53% id in 579 aa, and to Xanthomonas sp. xanthomonapepsin precursor SWALL:XANP_XANS2 (SWALL:Q60106) (827 aa) fasta scores: E(): 4.4e-33, 43.66% id in 616 aa.
  
     0.586
BPSS1973
sedolisin-B; Similar to Xanthomonas sp. xanthomonapepsin precursor SWALL:XANP_XANS2 (SWALL:Q60106) (827 aa) fasta scores: E(): 7.7e-91, 56.77% id in 627 aa, and to Pseudomonas sp. pseudomonapepsin precursor Pcp SWALL:PICP_PSESR (SWALL:P42790) (587 aa) fasta scores: E(): 2e-24, 48.81% id in 631 aa.
  
     0.555
BPSL0902
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc3405 or rs01714 SWALL:Q8XTZ0 (EMBL:AL646075) (261 aa) fasta scores: E(): 1.9e-55, 64.87% id in 242 aa, and to Chlorobium tepidum hypothetical protein ct0197 SWALL:AAM71445 (EMBL:AE012799) (263 aa) fasta scores: E(): 1e-44, 53.08% id in 243 aa. CDS is truncated at the N-terminus in comparison to orthologues; Repeat motif found as four tandem repeats with two transmembrane regions and a conserved Trp.
  
     0.546
BPSS0229
Putative exported protein; Similar to Rhizobium loti hypothetical protein mlr2187 SWALL:Q98IY7 (EMBL:AP002999) (508 aa) fasta scores: E(): 1.1e-53, 43.19% id in 551 aa.
 
 
 0.537
BPSL0822
Similar to Mycobacterium leprae putative ABC-transporter transmembrane protein ml0335 SWALL:Q9CCW1 (EMBL:AL583918) (286 aa) fasta scores: E(): 6.6e-22, 35.63% id in 261 aa, and to Thermoanaerobacter tengcongensis ABC-type Mn2+/Zn2+ transport systems, permease components znuB or tte0361 SWALL:Q8RCQ5 (EMBL:AE013009) (263 aa) fasta scores: E(): 2.3e-20, 32.03% id in 256 aa.
   
  
 0.523
BPSL2018
Putative acid phosphatase; Similar to Burkholderia pseudomallei acid phosphatase AcpA SWALL:Q9L5C5 (EMBL:AF252862) (577 aa) fasta scores: E(): 5.5e-101, 55.68% id in 537 aa, and to Ralstonia solanacearum putative acid phosphatase protein rsp1174 or rs05064 SWALL:Q8XQP7 (EMBL:AL646083) (715 aa) fasta scores: E(): 1.1e-96, 63.1% id in 515 aa.
  
     0.513
BPSS1562
Kumamolisin; Similar to Bacillus subtilis kumamolysin kumA SWALL:Q8RR56 (EMBL:AB070740) (572 aa) fasta scores: E(): 6e-86, 50.64% id in 541 aa, and to Pseudomonas sp. pseudomonapepsin precursor Pcp SWALL:PICP_PSESR (SWALL:P42790) (587 aa) fasta scores: E(): 2.2e-29, 31.64% id in 534 aa.
  
     0.486
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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