STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0319Hypothetical protein; No significant database matches. (179 aa)    
Predicted Functional Partners:
BPSL0320
PfkB family carbohydrate kinase; Similar to Escherichia coli fructokinase CscK SWALL:SCRK_ECOLI (SWALL:P40713) (307 aa) fasta scores: E(): 9.5e-18, 32.53% id in 292 aa, and to Deinococcus radiodurans fructokinase dr0728 SWALL:Q9RWE1 (EMBL:AE001928) (303 aa) fasta scores: E(): 6.8e-56, 54.05% id in 296 aa.
       0.793
BPSL0321
Similar to Xanthomonas campestris hypothetical protein xcc1510 SWALL:Q8PAH3 (EMBL:AE012251) (401 aa) fasta scores: E(): 1.8e-88, 59.11% id in 406 aa, and to Xylella fastidiosa hypothetical protein xf1611 SWALL:Q9PCZ3 (EMBL:AE003988) (401 aa) fasta scores: E(): 4.8e-86, 57.88% id in 406 aa. CDS is extended at the C-terminus in comparison to orthologues.
       0.792
BPSL0322
LacI family regulatory protein; Similar to Bacillus subtilis degradation activator DegA SWALL:DEGA_BACSU (SWALL:P37947) (337 aa) fasta scores: E(): 5.3e-19, 30.29% id in 340 aa, and to Xanthomonas campestris transcriptional regulator xcc3356 SWALL:Q8P5I5 (EMBL:AE012454) (343 aa) fasta scores: E(): 2.8e-24, 37.72% id in 334 aa.
       0.779
BPSL0323
Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 5.7e-40, 34.86% id in 522 aa, and to Ralstonia solanacearum probable methyl-accepting chemotaxis transmembrane protein rsp0303 or rs05471 SWALL:Q8XT14 (EMBL:AL646077) (515 aa) fasta scores: E(): 6.1e-47, 37.4% id in 516 aa.
       0.462
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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