node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BPSL0375 | rplC | BPSL0375 | BPSL3213 | ABC transport system ATP-binding protein; Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa1425 SWALL:Q9I3R9 (EMBL:AE004572) (538 aa) fasta scores: E(): 4.1e-65, 45.23% id in 535 aa. Weakly similar to Staphylococcus epidermidis erythromycin resistance ATP-binding protein MsrA SWALL:MSRA_STAEP (SWALL:P23212) (488 aa) fasta scores: E(): 5e-11, 25.83% id in 542 aa. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.751 |
BPSL0375 | rplD | BPSL0375 | BPSL3212 | ABC transport system ATP-binding protein; Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa1425 SWALL:Q9I3R9 (EMBL:AE004572) (538 aa) fasta scores: E(): 4.1e-65, 45.23% id in 535 aa. Weakly similar to Staphylococcus epidermidis erythromycin resistance ATP-binding protein MsrA SWALL:MSRA_STAEP (SWALL:P23212) (488 aa) fasta scores: E(): 5e-11, 25.83% id in 542 aa. | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.756 |
BPSL0375 | rplM | BPSL0375 | BPSL2911 | ABC transport system ATP-binding protein; Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa1425 SWALL:Q9I3R9 (EMBL:AE004572) (538 aa) fasta scores: E(): 4.1e-65, 45.23% id in 535 aa. Weakly similar to Staphylococcus epidermidis erythromycin resistance ATP-binding protein MsrA SWALL:MSRA_STAEP (SWALL:P23212) (488 aa) fasta scores: E(): 5e-11, 25.83% id in 542 aa. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.737 |
BPSL0375 | rplP | BPSL0375 | BPSL3206 | ABC transport system ATP-binding protein; Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa1425 SWALL:Q9I3R9 (EMBL:AE004572) (538 aa) fasta scores: E(): 4.1e-65, 45.23% id in 535 aa. Weakly similar to Staphylococcus epidermidis erythromycin resistance ATP-binding protein MsrA SWALL:MSRA_STAEP (SWALL:P23212) (488 aa) fasta scores: E(): 5e-11, 25.83% id in 542 aa. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.733 |
BPSL0375 | rplT | BPSL0375 | BPSL1942 | ABC transport system ATP-binding protein; Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa1425 SWALL:Q9I3R9 (EMBL:AE004572) (538 aa) fasta scores: E(): 4.1e-65, 45.23% id in 535 aa. Weakly similar to Staphylococcus epidermidis erythromycin resistance ATP-binding protein MsrA SWALL:MSRA_STAEP (SWALL:P23212) (488 aa) fasta scores: E(): 5e-11, 25.83% id in 542 aa. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.741 |
BPSL0375 | rplU | BPSL0375 | BPSL3005 | ABC transport system ATP-binding protein; Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa1425 SWALL:Q9I3R9 (EMBL:AE004572) (538 aa) fasta scores: E(): 4.1e-65, 45.23% id in 535 aa. Weakly similar to Staphylococcus epidermidis erythromycin resistance ATP-binding protein MsrA SWALL:MSRA_STAEP (SWALL:P23212) (488 aa) fasta scores: E(): 5e-11, 25.83% id in 542 aa. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.744 |
BPSL0375 | rpmA | BPSL0375 | BPSL3004 | ABC transport system ATP-binding protein; Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa1425 SWALL:Q9I3R9 (EMBL:AE004572) (538 aa) fasta scores: E(): 4.1e-65, 45.23% id in 535 aa. Weakly similar to Staphylococcus epidermidis erythromycin resistance ATP-binding protein MsrA SWALL:MSRA_STAEP (SWALL:P23212) (488 aa) fasta scores: E(): 5e-11, 25.83% id in 542 aa. | Similar to Escherichia coli 50S ribosomal protein L27 RpmA or b3185 or z4547 or ecs4064 SWALL:RL27_ECOLI (SWALL:P02427) (84 aa) fasta scores: E(): 7.7e-19, 65.43% id in 81 aa; Belongs to the bacterial ribosomal protein bL27 family. | 0.739 |
BPSL0375 | rpsC | BPSL0375 | BPSL3207 | ABC transport system ATP-binding protein; Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa1425 SWALL:Q9I3R9 (EMBL:AE004572) (538 aa) fasta scores: E(): 4.1e-65, 45.23% id in 535 aa. Weakly similar to Staphylococcus epidermidis erythromycin resistance ATP-binding protein MsrA SWALL:MSRA_STAEP (SWALL:P23212) (488 aa) fasta scores: E(): 5e-11, 25.83% id in 542 aa. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.737 |
BPSL0375 | rpsG | BPSL0375 | BPSL3217 | ABC transport system ATP-binding protein; Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa1425 SWALL:Q9I3R9 (EMBL:AE004572) (538 aa) fasta scores: E(): 4.1e-65, 45.23% id in 535 aa. Weakly similar to Staphylococcus epidermidis erythromycin resistance ATP-binding protein MsrA SWALL:MSRA_STAEP (SWALL:P23212) (488 aa) fasta scores: E(): 5e-11, 25.83% id in 542 aa. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.737 |
BPSL0375 | rpsO | BPSL0375 | BPSL1206 | ABC transport system ATP-binding protein; Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa1425 SWALL:Q9I3R9 (EMBL:AE004572) (538 aa) fasta scores: E(): 4.1e-65, 45.23% id in 535 aa. Weakly similar to Staphylococcus epidermidis erythromycin resistance ATP-binding protein MsrA SWALL:MSRA_STAEP (SWALL:P23212) (488 aa) fasta scores: E(): 5e-11, 25.83% id in 542 aa. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.740 |
rplC | BPSL0375 | BPSL3213 | BPSL0375 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | ABC transport system ATP-binding protein; Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa1425 SWALL:Q9I3R9 (EMBL:AE004572) (538 aa) fasta scores: E(): 4.1e-65, 45.23% id in 535 aa. Weakly similar to Staphylococcus epidermidis erythromycin resistance ATP-binding protein MsrA SWALL:MSRA_STAEP (SWALL:P23212) (488 aa) fasta scores: E(): 5e-11, 25.83% id in 542 aa. | 0.751 |
rplC | rplD | BPSL3213 | BPSL3212 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.999 |
rplC | rplM | BPSL3213 | BPSL2911 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplC | rplP | BPSL3213 | BPSL3206 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplC | rplT | BPSL3213 | BPSL1942 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.996 |
rplC | rplU | BPSL3213 | BPSL3005 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.994 |
rplC | rpmA | BPSL3213 | BPSL3004 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Similar to Escherichia coli 50S ribosomal protein L27 RpmA or b3185 or z4547 or ecs4064 SWALL:RL27_ECOLI (SWALL:P02427) (84 aa) fasta scores: E(): 7.7e-19, 65.43% id in 81 aa; Belongs to the bacterial ribosomal protein bL27 family. | 0.997 |
rplC | rpsC | BPSL3213 | BPSL3207 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplC | rpsG | BPSL3213 | BPSL3217 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.997 |
rplC | rpsO | BPSL3213 | BPSL1206 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.996 |