STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0494Similar to Bacillus subtilis als operon regulatory protein AlsR SWALL:ALSR_BACSU (SWALL:Q04778) (302 aa) fasta scores: E(): 1.3e-26, 33.33% id in 288 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa5218 SWALL:Q9HTX2 (EMBL:AE004934) (304 aa) fasta scores: E(): 7.6e-45, 48.09% id in 289 aa; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
BPSS0155
Putative LysR-family transcriptional regulator; Similar to Escherichia coli transcriptional activator protein LysR or b2839 SWALL:LYSR_ECOLI (SWALL:P03030) (311 aa) fasta scores: E(): 1.7e-16, 34.95% id in 246 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa5085 SWALL:Q9HU98 (EMBL:AE004921) (318 aa) fasta scores: E(): 1.7e-30, 41.58% id in 291 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.766
BPSL1572
Putative LysR-family transcriptional regulator; Similar to Thiobacillus denitrificans CbbR SWALL:Q9APD4 (EMBL:AF307090) (316 aa) fasta scores: E(): 1e-21, 32.65% id in 297 aa, and to Chromatium vinosum rubisco operon transcriptional regulator RbcR SWALL:RBCR_CHRVI (SWALL:P25544) (302 aa) fasta scores: E(): 1e-20, 32.99% id in 297 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.765
BPSS1643
Conserved hypothetical protein (fragment); Partial CDS. This CDS is truncated at the N-terminal region and contains an in-frame stop codon. Similar to the C-terminal region of Ralstonia solanacearum hypothetical transmembrane protein rsp1338 or rs04763 or rsp1307 or rs05692 SWALL:Q8XGL9 (EMBL:AL646084) (540 aa) fasta scores: E(): 1.5e-10, 47.05% id in 102 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.740
BPSS2207
Similar to Ralstonia solanacearum probable transcriptional regulator protein rsp1571 or rs02127 SWALL:Q8XPR7 (EMBL:AL646085) (324 aa) fasta scores: E(): 4e-38, 37.17% id in 304 aa, and to Pseudomonas sp. putative transcriptional regulator ORF99 SWALL:Q936X4 (EMBL:U66917) (322 aa) fasta scores: E(): 4.8e-19, 34.25% id in 289 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.739
BPSS2117
Putative LysR family transcriptional regulator; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glycine cleavage system transcriptional activator GcvA or b2808 or c3378 or z4125 or ecs3668 SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 2.1e-26, 35.48% id in 310 aa, and to Caulobacter crescentus transcriptional regulator, LysR family cc1117 SWALL:Q9A977 (EMBL:AE005790) (340 aa) fasta scores: E(): 2.3e-27, 37.01% id in 308 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.738
BPSL1748
Similar to Pseudomonas aeruginosa probable transcriptional regulator pa1328 SWALL:Q9I416 (EMBL:AE004562) (302 aa) fasta scores: E(): 3.2e-75, 67.79% id in 295 aa, and to Rhizobium meliloti putative transcription regulator protein r00290 or smc00370 SWALL:Q92SS5 (EMBL:AL591783) (296 aa) fasta scores: E(): 9.7e-34, 38.3% id in 295 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.731
BPSS0438
Putative LysR-family transcriptional regulator; Similar to Ralstonia solanacearum probable transcription regulator protein rsp0910 or rs01682 SWALL:Q8XRE4 (EMBL:AL646081) (309 aa) fasta scores: E(): 5.5e-53, 49.5% id in 303 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0056 SWALL:Q9I776 (EMBL:AE004445) (306 aa) fasta scores: E(): 3.5e-30, 35.43% id in 302 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.694
BPSS0166
LysR family regulatory protein; Similar to Pseudomonas aeruginosa transcriptional regulator for exotoxin A production PtxR or pa2258 SWALL:PTXR_PSEAE (SWALL:P72131) (312 aa) fasta scores: E(): 1.3e-42, 42.06% id in 290 aa, and to Salmonella typhi possible LysR-family transcriptional regulator sty3037 SWALL:Q8Z482 (EMBL:AL627276) (310 aa) fasta scores: E(): 4.1e-25, 30.84% id in 308 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.682
BPSL0411
LysR family regulatory protein; Similar to Escherichia coli glycine cleavage system transcriptional activator GcvA SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 1.6e-39, 42.95% id in 291 aa, and to Ralstonia solanacearum probable transcriptional regulator transcription regulator protein rsp0912 or rs01684 SWALL:Q8XRE2 (EMBL:AL646081) (313 aa) fasta scores: E(): 3.6e-75, 61.58% id in 315 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.681
BPSS0559
LysR family regulatory protein; Similar to Escherichia coli glycine cleavage system transcriptional activator GcvA SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 1.9e-32, 37.5% id in 296 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0032 SWALL:Q9I798 (EMBL:AE004442) (304 aa) fasta scores: E(): 9.4e-40, 43.53% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.673
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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