STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0552Hypothetical protein; No significant database matches. (86 aa)    
Predicted Functional Partners:
BPSL0551
Hypothetical protein; No significant database matches. Similar to BPSL0759, 75.904% identity (76.829% ungapped) in 166 aa overlap.
       0.588
BPSL0553
Putative DNA-binding protein; Poor database matches. N-terminus is weakly similar to the N-terminal region of Rhizobium etli hypothetical protein YH035 SWALL:AAM54968 (EMBL:U80928) (101 aa) fasta scores: E(): 0.0068, 40.84% id in 71 aa.
       0.535
BPSL0550
Hypothetical protein; No significant database matches.
       0.411
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.