STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0606Hypothetical protein; N-terminal region is similar to Escherichia coli protein ElaA SWALL:ELAA_ECOLI (SWALL:P52077) (153 aa) fasta scores: E(): 1.9e-10, 34% id in 150 aa, and to Pseudomonas aeruginosa hypothetical protein PA0115 SWALL:Q9I717 (EMBL:AE004449) (150 aa) fasta scores: E(): 2.2e-10, 34.43% id in 151 aa. CDS is extended at the C-terminus in comparison to orthologues. (216 aa)    
Predicted Functional Partners:
manC
Similar to Salmonella typhimurium mannose-1-phosphate guanylyltransferase ManC or CpsB or RfbM SWALL:MANC_SALTY (SWALL:P26340) (480 aa) fasta scores: E(): 2.4e-83, 52.26% id in 486 aa, and to Aeromonas hydrophila putative mannose-1-phosphate guanylyltransferase ManC SWALL:AAM22554 (EMBL:AF343089) (501 aa) fasta scores: E(): 1.2e-88, 47.74% id in 488 aa. Similar to BPSS1835, 63.843% identity (64.644% ungapped) in 484 aa overlap. CDS is extended at the C-terminus in comparison to orthologues and paralogue; Belongs to the mannose-6-phosphate isomerase type 2 family.
       0.773
BPSL0604
Similar to Escherichia coli glycosyltransferase WcaO SWALL:Q9X4C4 (EMBL:AF104912) (393 aa) fasta scores: E(): 1.5e-22, 28.93% id in 356 aa, and to Rhizobium meliloti putative glycosyltransferase, forming alpha-gylcosyl linkages protein ExpE4 or rb0887 or smb21311 SWALL:P96434 (EMBL:Z79692) (420 aa) fasta scores: E(): 8e-10, 28.57% id in 350 aa.
       0.664
BPSL0603
Putative polysaccharide biosynthesis protein; Similar to Escherichia coli putative O-antigen transporter RfbX or Wzx SWALL:RFBX_ECOLI (SWALL:P37746) (415 aa) fasta scores: E(): 4.6e-37, 29.34% id in 409 aa, and to Methanobacterium thermoautotrophicum O-antigen transporter MTH347 SWALL:O26447 (EMBL:AE000819) (420 aa) fasta scores: E(): 1.2e-44, 32.34% id in 405 aa.
       0.490
BPSL0608
PAP2 superfamily; Similar to Aeromonas hydrophila hypothetical protein SWALL:Q9X647 (EMBL:AF131869) (264 aa) fasta scores: E(): 2.7e-11, 32.66% id in 251 aa.
 
     0.423
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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