STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0795Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0569 or rs04896 SWALL:Q8Y1W8 (EMBL:AL646060) (107 aa) fasta scores: E(): 8.6e-16, 50.47% id in 105 aa. (107 aa)    
Predicted Functional Partners:
BPSL0794
AzlC family protein; Similar to Ralstonia solanacearum hypothetical transmembrane protein rsc0568 or rs04897 SWALL:Q8Y1W9 (EMBL:AL646060) (265 aa) fasta scores: E(): 2.7e-49, 59.18% id in 245 aa. Weakly similar to Ralstonia solanacearum hypothetical transmembrane protein rsc0513 or rs04992 SWALL:Q8Y223 (EMBL:AL646059) (242 aa) fasta scores: E(): 3.5e-15, 28.2% id in 234 aa.
 
  
 0.974
BPSL2494
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0929 or rs04485 SWALL:Q8Y0W4 (EMBL:AL646061) (151 aa) fasta scores: E(): 1.1e-29, 56.66% id in 150 aa.
  
     0.769
BPSL0788
Similar to Ralstonia solanacearum hypothetical protein rsc0562 or rs04903 SWALL:Q8Y1X5 (EMBL:AL646060) (195 aa) fasta scores: E(): 1.8e-34, 50.99% id in 202 aa; downstream repeat region(acagcacaa)3.
 
     0.745
BPSL3237
Similar to Ralstonia solanacearum hypothetical protein Rsc3098 or Rs00551 SWALL:Q8XUT7 (EMBL:AL646073) (231 aa) fasta scores: E(): 1.2e-44, 59.34% id in 214 aa.
 
     0.733
BPSS1091
Conserved hypothetical protein; Similar to Ralstonia solanacearum putative HNS-like transcription regulator protein rsc0867 or rs04950 SWALL:Q8Y126 (EMBL:AL646061) (96 aa) fasta scores: E(): 3.2e-07, 43.01% id in 93 aa, and to Ralstonia solanacearum putative HNS-like transcription regulator protein rsp0029 or rs02004 SWALL:Q8XTS5 (EMBL:AL646076) (95 aa) fasta scores: E(): 2.6e-06, 39.17% id in 97 aa, and to Ralstonia solanacearum putative hns-like transcription regulator protein rsp0335 or rs00711 SWALL:Q8XSY2 (EMBL:AL646078) (96 aa) fasta scores: E(): 2.6e-05, 35.71% id in 98 aa.
  
     0.729
BPSL2957
Similar to Ralstonia solanacearum hypothetical protein RSC2765 or RS00089 SWALL:Q8XVR4 (EMBL:AL646071) (198 aa) fasta scores: E(): 9e-39, 60.41% id in 192 aa. C-terminal region is similar to Xylella fastidiosa conserved hypothetical protein SWALL:Q87A41 (EMBL:AE012560) (138 aa) fasta scores: E(): 0.00017, 31.2% id in 125 aa. Possible alternative translational start site after codon 55.
  
     0.728
BPSL2302
Sensor kinase protein; Weakly similar to Rhodobacter capsulatus C4-dicarboxylate transport sensor protein DctS SWALL:DCTS_RHOCA (SWALL:P37739) (657 aa) fasta scores: E(): 3.1e-26, 30.07% id in 788 aa. Similar to Ralstonia solanacearum probable two-component transmembrane sensor histidine kinase transcription regulator protein rsc1598 or rs03960 SWALL:Q8XZ08 (EMBL:AL646065) (857 aa) fasta scores: E(): 1e-180, 57.72% id in 790 aa.
 
     0.726
phaP
Phasin-like protein; Similar to Alcaligenes eutrophus granule-associated protein (phasin) PhaP SWALL:Q44013 (EMBL:X85729) (192 aa) fasta scores: E(): 1.7e-37, 71.82% id in 181 aa, and to Ralstonia solanacearum hypothetical protein rsc1605 or rs03967 SWALL:Q8XZ01 (EMBL:AL646065) (193 aa) fasta scores: E(): 2.9e-35, 68.5% id in 181 aa.
  
     0.707
gspL
Previously sequenced as Burkholderia pseudomallei general secretory pathway protein L GspL SWALL:Q9ZF77 (EMBL:AF110185) (444 aa) fasta scores: E(): 3.1e-79, 95.67% id in 462 aa. CDS is extended at the N-terminus in comparison to the previously sequenced protein. CDS also contains extra internal amino acid residues (229 to 246) relative to the previously sequenced protein. C-terminal region is similar to Pseudomonas aeruginosa general secretion pathway protein L XcpY SWALL:GSPL_PSEAE (SWALL:P25060) (382 aa) fasta scores: E(): 0.75, 24.33% id in 378 aa.
  
     0.696
BPSL0341
Putative transport protein; Similar to Ralstonia solanacearum hypothetical transmembrane protein rsp1376 or rs02082 SWALL:Q8XQB0 (EMBL:AL646084) (250 aa) fasta scores: E(): 4.5e-70, 78.47% id in 223 aa. Weakly similar to Bacillus subtilis branched-chain amino acid transport protein AzlC SWALL:AZLC_BACSU (SWALL:O07942) (254 aa) fasta scores: E(): 8.2e-10, 21.25% id in 240 aa.
  
  
 0.681
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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