STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0823Similar to Mycobacterium leprae putative ABC-tranporter ATP-binding protein ml0336 SWALL:Q9CCW0 (EMBL:AL583918) (275 aa) fasta scores: E(): 4.4e-25, 43.6% id in 250 aa, and to Pyrococcus horikoshii hypothetical protein ph1653 SWALL:O59348 (EMBL:AP000006) (260 aa) fasta scores: E(): 1.1e-19, 33.2% id in 256 aa. (290 aa)    
Predicted Functional Partners:
BPSL0822
Similar to Mycobacterium leprae putative ABC-transporter transmembrane protein ml0335 SWALL:Q9CCW1 (EMBL:AL583918) (286 aa) fasta scores: E(): 6.6e-22, 35.63% id in 261 aa, and to Thermoanaerobacter tengcongensis ABC-type Mn2+/Zn2+ transport systems, permease components znuB or tte0361 SWALL:Q8RCQ5 (EMBL:AE013009) (263 aa) fasta scores: E(): 2.3e-20, 32.03% id in 256 aa.
 
   
 0.945
BPSL0824
Similar to Yersinia pestis periplasmic chelated iron-binding protein YfeA or ypo2439 or y1897 SWALL:YFEA_YERPE (SWALL:Q56952) (311 aa) fasta scores: E(): 3.9e-08, 31.05% id in 219 aa, and to Mycobacterium tuberculosis hypothetical protein rv2059 or mtcy63a.01c or mt2119 SWALL:O07257 (EMBL:Z97984) (511 aa) fasta scores: E(): 2.2e-19, 34.41% id in 247 aa.
 
  
 0.919
BPSL0977
Putative transmembrane ABC transporter permease; Similar to Pseudomonas aeruginosa ABC-type permease PhuU SWALL:O68878 (EMBL:AF055999) (326 aa) fasta scores: E(): 5.1e-33, 45.06% id in 324 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc2399 or rs02719 SWALL:Q8XWS1 (EMBL:AL646070) (335 aa) fasta scores: E(): 1.4e-60, 58.51% id in 323 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.764
BPSL1783
Whole length similar to Streptomyces coelicolor putative membrane transport protein sco7398 or sc10g8.26C SWALL:Q9L179 (EMBL:AL158057) (694 aa) fasta scores: E(): 5.5e-54, 37.03% id in 702 aa, and C-terminal half to Escherichia coli iron FecD or b4288 SWALL:FECD_ECOLI (SWALL:P15029) (318 aa) fasta scores: E(): 7.3e-30, 37.85% id in 317 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.764
BPSL2721
FecCD-family membrane transporter protein; Similar to Pseudomonas aeruginosa probable permease of ABC transporter pa2914 SWALL:Q9HZT3 (EMBL:AE004717) (343 aa) fasta scores: E(): 1.2e-56, 55.78% id in 346 aa and to Rhizobium loti ABC transporter, permease protein mlr8229 SWALL:Q983Q1 (EMBL:AP003013) (349 aa) fasta scores: E(): 6.5e-44, 46.7% id in 364 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.764
BPSS0241
Putative hemin ABC transport system, membrane protein; Similar to Yersinia pestis hemin transport system permease protein HmuU or ypo0280 or y0540 SWALL:HMUU_YERPE (SWALL:Q56992) (334 aa) fasta scores: E(): 2.6e-43, 45.48% id in 343 aa, and to Bordetella avium BhuU SWALL:Q8L1U4 (EMBL:AY095952) (334 aa) fasta scores: E(): 9.1e-45, 49.41% id in 344 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.764
btuF
Similar to Salmonella typhimurium vitamin B12 transport protein BtuF or stm0206 SWALL:BTUF_SALTY (SWALL:Q8ZRP7) (266 aa) fasta scores: E(): 1.3e-20, 38.03% id in 255 aa, and to Ralstonia solanacearum probable substrate-binding periplasmic rsc2394 or rs02728 SWALL:Q8XWS6 (EMBL:AL646069) (313 aa) fasta scores: E(): 6.9e-67, 59.54% id in 309 aa, and to Escherichia coli vitamin B12 transport protein BtuF or b0158 SWALL:BTUF_ECOLI (SWALL:P37028) (266 aa) fasta scores: E(): 2.8e-22, 38.03% id in 255 aa.
  
 
 0.739
BPSL2722
Similar to Streptomyces coelicolor putative iron transport lipoprotein Sco7218 or sc2h12.17 SWALL:Q9K467 (EMBL:AL359215) (345 aa) fasta scores: E(): 3.8e-41, 42.73% id in 337 aa and to Brucella melitensis iron transport protein bmeii0535 SWALL:Q8YCJ3 (EMBL:AE009689) (344 aa) fasta scores: E(): 4.8e-17, 28.69% id in 345 aa.
  
 
 0.738
BPSL1712
Putative non-ribosomal antibiotic-related peptide synthase; Similar to Pseudomonas syringae syringomycin synthetase SyrE SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 1.5e-105, 31.93% id in 6198 aa, and to all the domains of Bacillus brevis tyrocidine synthetase III TycC SWALL:TYCC_BACBR (SWALL:O30409) blast scores: E(): 0.0, score: 4799 27% id. Note: Taking into consideration the blastp similarities and all the similarities to the domains in Bacillus brevis TycC, it could be proposed that BSPL1712 possibly incorporates six amino acids (Asn, Gln, Tyr, Val, Orn and Leu) into [...]
  
  
 0.521
BPSS0359
Putative membrane protein; Similar to Escherichia coli hypothetical protein YcdN or b1016/b1017 SWALL:YCDN_ECOLI (SWALL:P75901) (276 aa) fasta scores: E(): 5e-17, 30.28% id in 284 aa, and to Brucella melitensis high-affinity iron permease bmeii0883 SWALL:Q8YBL6 (EMBL:AE009722) (278 aa) fasta scores: E(): 6.8e-49, 53.58% id in 265 aa.
  
  
 0.517
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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