STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL1007Putative fimbriae usher protein; Similar, although shorter in its N-terminal region, to Escherichia coli outer membrane usher protein precursor FanD SWALL:FAND_ECOLI (SWALL:P12050) (783 aa) fasta scores: E(): 7.7e-14, 23.63% id in 732 aa, and to Ralstonia solanacearum probable signal peptide protein rsp1498 or rs03043 SWALL:Q8XPY8 (EMBL:AL646085) (786 aa) fasta scores: E(): 2.6e-122, 46.55% id in 769 aa. Possible gene remnant. (766 aa)    
Predicted Functional Partners:
BPSL1008
Putative exported fimbriae-related chaperone; Similar to, although shorted in its N-terminal region than, Escherichia coli chaperone protein precursor EcpD or b0140 SWALL:ECPD_ECOLI (SWALL:P33128) (246 aa) fasta scores: E(): 0.00033, 30.58% id in 206 aa, and to Ralstonia solanacearum putative pili assembly chaperone transmembrane protein rsp1499 or rs03042 SWALL:Q8XPY7 (EMBL:AL646085) (241 aa) fasta scores: E(): 7.3e-28, 44% id in 225 aa.
 
 
 0.888
BPSL2028
Similar to Yersinia pestis putative chaperone protein ypo1697 SWALL:Q8ZFK6 (EMBL:AJ414150) (250 aa) fasta scores: E(): 1.8e-33, 46.08% id in 230 aa, and to Xanthomonas campestris pili assembly chaperone EcpD or xcc1380 SWALL:AAM40678 (EMBL:AE012237) (251 aa) fasta scores: E(): 1.6e-11, 32.31% id in 263 aa.
 
 
 0.888
BPSL1010
Putative lipoprotein; Similar to Agrobacterium tumefaciens hypothetical protein atu4730 or agr_l_303 SWALL:Q8U6S6 (EMBL:AE009401) (316 aa) fasta scores: E(): 8e-32, 39.75% id in 327 aa, and to Xanthomonas axonopodis pv. citri str. 306 conserved hypothetical protein xac1424 SWALL:AAM36295 (EMBL:AE011774) (342 aa) fasta scores: E(): 1.1e-16, 35.04% id in 351 aa.
 
  
 0.800
BPSL1009
Putative exported protein; Similar to Ralstonia solanacearum probable signal peptide protein rsp1500 or rs03041 SWALL:Q8XPY6 (EMBL:AL646085) (173 aa) fasta scores: E(): 1e-30, 62.65% id in 166 aa, and to Agrobacterium tumefaciens hypothetical protein atu4733 or agr_l_295 SWALL:Q8U6S3 (EMBL:AE009401) (177 aa) fasta scores: E(): 1.4e-20, 43.01% id in 186 aa.
 
  
 0.795
BPSL2026
Putative lipoprotein; Similar to Acinetobacter baumannii hypothetical secreted protein CsuE SWALL:AAP43040 (EMBL:AY241696) (339 aa) fasta scores: E(): 1e-06, 31.08% id in 341 aa.
 
  
 0.779
BPSL2029
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein pa4648 SWALL:Q9HVE4 (EMBL:AE004879) (182 aa) fasta scores: E(): 5.7e-10, 36.93% id in 176 aa, and to Vibrio parahaemolyticus CsuA SWALL:Q9AG87 (EMBL:AF339087) (181 aa) fasta scores: E(): 4.2e-07, 32.36% id in 173 aa. Note: Also similar to the upstream CDS BPSL2030 (187 aa) fasta scores: E(): 1.5e-09, 43.949% identity in 157 aa overlap.
 
  
 0.727
BPSL2031
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein pa4648 SWALL:Q9HVE4 (EMBL:AE004879) (182 aa) fasta scores: E(): 1.7e-07, 30.22% id in 182 aa, and to Yersinia pestis putative exported protein ypo1699 SWALL:Q8ZFK4 (EMBL:AJ414150) (176 aa) fasta scores: E(): 1.7e-06, 30.4% id in 171 aa. Note: Also similar to BPSL2030 (187 aa) fasta scores: E(): 6.4e-14, 37.576% identity in 165 aa overlap and to BPSL2029 (175 aa) fasta scores: E(): 2.6e-05, 34.118% identity in 170 aa overlap.
 
  
 0.659
BPSS0690
Conserved hypothetical protein; Similar to Ralstonia solanacearum putative signal peptide protein rsc1462 or rs03845 SWALL:Q8XZD9 (EMBL:AL646064) (367 aa) fasta scores: E(): 3.8e-41, 37.97% id in 366 aa, and to Yersinia pestis hypothetical protein ypo1559 or y2608 SWALL:Q8ZFW6 (EMBL:AJ414149) (379 aa) fasta scores: E(): 1.3e-32, 34.97% id in 366 aa. Possible alternative translational start site.
  
     0.650
BPSL1799
Similar to Escherichia coli O157:H7 putative fimbrial chaperone YfcS or z3599 or ecs3220 SWALL:Q8XCP6 (EMBL:AE005465) (252 aa) fasta scores: E(): 1.2e-32, 39.59% id in 245 aa, and to Proteus mirabilis chaperone protein PmfD precursor WALL:PMFD_PROMI (SWALL:P53520) (254 aa) fasta scores: E(): 4.4e-29, 36.63% id in 232 aa.
 
 
 0.648
BPSS0244
Putative exported heme receptor protein; Similar to Caulobacter crescentus TonB-dependent receptor cc2194 SWALL:Q9A6A0 (EMBL:AE005891) (733 aa) fasta scores: E(): 4.5e-100, 41.94% id in 739 aa, and to Vibrio mimicus heme receptor precursor MhuA SWALL:Q9AQK5 (EMBL:AB048382) (710 aa) fasta scores: E(): 1.9e-33, 29.43% id in 727 aa.
  
     0.612
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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