STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL1304BHypothetical protein; Poor database matches. Weakly similar to an internal region of Mycobacterium tuberculosis, and Mycobacterium bovis putative lipoprotein precursor LppW SWALL:LPPW_MYCTU (SWALL:Q10823) (314 aa) fasta scores: E(): 1.4, 34.74% id in 118 aa. (148 aa)    
Predicted Functional Partners:
BPSL1304A
Putative exported protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Burkholderia cepacia outer membrane protein OpcP1 SWALL:Q45106 (EMBL:D63823) (361 aa) fasta scores: E(): 0.0057, 44.59% id in 74 aa, and Ralstonia solanacearum probable porin transmembrane protein RS04105 SWALL:Q8Y0G2 (EMBL:AL646062) (394 aa) fasta scores: E(): 0.024, 42.85% id in 63 aa.
       0.445
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
Server load: low (20%) [HD]