STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL1482Conserved hypothetical protein; Similar to Brucella melitensis SEC-independent protein translocase protein bmeii0398 SWALL:Q8YCY0 (EMBL:AE009677) (141 aa) fasta scores: E(): 5.1e-13, 37.95% id in 137 aa, and to Agrobacterium tumefaciens hypothetical protein atu0250 or agr_c_428 SWALL:Q8UIP3 (EMBL:AE008997) (157 aa) fasta scores: E(): 1.4e-11, 42.34% id in 111 aa. Note: this CDS is longer in its C-terminal region than most of its database matches. (180 aa)    
Predicted Functional Partners:
BPSL1483
Putative DNA-binding protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YjeB or b4178 or z5785 or ecs5154 SWALL:YJEB_ECOLI (SWALL:P21498) (141 aa) fasta scores: E(): 7.2e-18, 38.62% id in 145 aa, and to Ralstonia solanacearum hypothetical protein rsc3397 or rs01705 SWALL:Q8XTZ8 (EMBL:AL646075) (172 aa) fasta scores: E(): 2.9e-24, 47.61% id in 168 aa.
  
    0.558
BPSS2298
Conserved hypothetical protein; Similar to the C-terminal region of Caulobacter crescentus hypothetical protein cc1843 SWALL:Q9A783 (EMBL:AE005858) (214 aa) fasta scores: E(): 1.2e-16, 31.53% id in 222 aa, and to Rhizobium meliloti hypothetical protein r01644 or smc00952 SWALL:Q92PT6 (EMBL:AL591787) (221 aa) fasta scores: E(): 3.1e-15, 32.35% id in 204 aa. CDS is extended at the N-terminus in comparison to orthologues.
  
  
 0.492
BPSL1281
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc2889 or rs00211 SWALL:Q8XVE2 (EMBL:AL646072) (740 aa) fasta scores: E(): 7.5e-60, 32.04% id in 752 aa, and to Salmonella typhi putative membrane protein sty1095 SWALL:Q8Z7R8 (EMBL:AL627269) (717 aa) fasta scores: E(): 1.3e-24, 25.21% id in 694 aa.
  
     0.489
hmpA
Flavohemoprotein; Similar to Alcaligenes eutrophus flavohemoprotein Fhp SWALL:HMPA_ALCEU (SWALL:P39662) (403 aa) fasta scores: E(): 1.9e-68, 52.68% id in 391 aa, and to Salmonella typhimurium flavohemoprotein Hmp or HmpA or FrsB or stm2556 SWALL:HMPA_SALTY (SWALL:P26353) (396 aa) fasta scores: E(): 4.6e-49, 41.85% id in 399 aa; Belongs to the globin family.
  
  
 0.461
BPSL1842
Putative membrane protein; No significant database matches.
  
     0.403
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.