STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL1658Identical to Burkholderia cepacia insertion element IS407 hypothetical protein SWALL:YI74_BURCE (SWALL:P24580) (87 aa) fasta scores: E(): 3.7e-32, 100% id in 87 aa, and higly similar to to Ralstonia solanacearum ISRso14-transposase orfA protein SWALL:Q8XGL4 (EMBL:AL646083) (87 aa) fasta scores: E(): 2.1e-29, 93.1% id in 87 aa. (87 aa)    
Predicted Functional Partners:
BPSL1657
Similar to the C-terminal region of Xanthomonas campestris insertion element IS476 hypothetical protein SWALL:YI61_XANCV (SWALL:P25438) (346 aa) fasta scores: E(): 1.3e-63, 61.5% id in 265 aa, and to the full length Ralstonia solanacearum ISRso14-transposase OrfB protein SWALL:Q8XF72 (EMBL:AL646083) (275 aa) fasta scores: E(): 5.9e-98, 86.86% id in 274 aa.
  
 0.926
BPSL0943
Putative insertion element protein; Similar to the C-terminal region of Xanthomonas campestris insertion element IS476 hypothetical 39.2 kDa protein SWALL:YI61_XANCV (SWALL:P25438) (346 aa) fasta scores: E(): 1.9e-46, 46.59% id in 264 aa, and to the full length Ralstonia solanacearum ISRso14-transposase OrfB protein SWALL:Q8XF72 (EMBL:AL646083) (275 aa) fasta scores: E(): 5.6e-57, 53.96% id in 252 aa.
  
 0.768
BPSL3117
Insertion element hypothetical protein; Similar to Ralstonia solanacearum ISRso14-transposase orfB protein SWALL:Q8XF72 (EMBL:AL646083) (275 aa) fasta scores: E(): 1.2e-97, 86.86% id in 274 aa. C-terminus is identical to Burkholderia cepacia insertion element IS407 hypothetical protein SWALL:YI71_BURCE (SWALL:P24577) (183 aa) fasta scores: E(): 8.9e-73, 100% id in 183 aa.
  
 0.760
BPSL0090
Putative transposase protein; Similar to Ralstonia solanacearum ISRso14-transposase OrfB protein SWALL:Q8XF72 (EMBL:AL646083) (275 aa) fasta scores: E(): 7.1e-98, 86.86% id in 274 aa, and to Pseudomonas aeruginosa hypothetical protein pa0987 SWALL:Q9I4Y2 (EMBL:AE004531) (280 aa) fasta scores: E(): 4.2e-77, 70.49% id in 261 aa.
  
 0.759
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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