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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL1663Similar to Ralstonia solanacearum hypothetical protein rsp0167 rsp0167 or rs04679 SWALL:Q8XTE6 (EMBL:AL646076) (304 aa) fasta scores: E(): 7.2e-38, 42.43% id in 271 aa. (291 aa)    
Predicted Functional Partners:
BPSL1662
Hypothetical protein; No significant database matches.
       0.773
BPSL1664
Putative toxin transport-related membrane protein; Similar to the C-terminal region of Vibrio cholerae toxin secretion ATP-binding protein vca1084 SWALL:Q9KKL9 (EMBL:AE004433) (704 aa) fasta scores: E(): 1.4e-62, 34.99% id in 563 aa, and of Pasteurella haemolytica-like sp. leukotoxin secretion ATP-binding protein LktB SWALL:HLYB_PASSP (SWALL:P55122) (708 aa) fasta scores: E(): 5.3e-37, 27.82% id in 575 aa, and to the full length of Ralstonia solanacearum putative composite ATP-binding transmembrane ABC transporter protein rsp1182 or rs05072 SWALL:Q8XQP0 (EMBL:AL646083) (739 aa) fasta s [...]
 
   
 0.754
BPSL1665
Similar to Rhizobium meliloti putative toxin secretion transmembrane protein r02036 or smc04208 SWALL:Q92NX2 (EMBL:AL591789) (436 aa) fasta scores: E(): 1.6e-27, 33.25% id in 439 aa, and to Vibrio cholerae secretion protein, HlyD family vca1080 SWALL:Q9KKM3 (EMBL:AE004433) (481 aa) fasta scores: E(): 6.4e-27, 34.25% id in 435 aa.
 
   
 0.753
BPSL1661
Putative hemolysin-related protein; Similar to the C-terminal region of Ralstonia solanacearum putative hemagglutinin/hemolysin-related protein rsp1180 or rs05070 SWALL:Q8XQP2 (EMBL:AL646083) (4106 aa) fasta scores: E(): 6.4e-92, 30.67% id in 3218 aa, and also to the C-terminal region of Escherichia coli O157:H7 putative RTX family exoprotein z0615 SWALL:Q8X4H5 (EMBL:AE005229) (5188 aa) fasta scores: E(): 4e-38, 26.08% id in 3209 aa. Note: Contains a repeat region between residue 538 and residue 1362.
       0.531
BPSS1183
Putative non-ribosomally encoded peptide/polyketide synthase; Similar to Pseudomonas syringae syringomycin biosynthesis enzyme 2 Syrb2 SWALL:Q9RBY6 (EMBL:U25130) (310 aa) fasta scores: E(): 4.5e-72, 53.61% id in 304 aa, and to Pseudomonas syringae CmaB SWALL:O50472 (EMBL:U14657) (262 aa) fasta scores: E(): 1.9e-55, 53.93% id in 267 aa.
      
 0.499
cysC
Putative adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
     
 0.478
BPSL1666
Hypothetical protein; Very low similarities to any database matches to the full length of the CDS. The matches are reduced to the TPR domains that this CDS contains, e.g. Methanosarcina acetivorans TPR-domain containing protein ma1613 SWALL:Q8TQD1 (EMBL:AE010832) (1885 aa) fasta scores: E(): 1.6e-07, 21.22% id in 1164 aa.
       0.463
BPSL1667
Hypothetical protein; Similar in the C-terminal region to Ralstonia solanacearum hypothetical protein rsc3164 or rs00434 SWALL:Q8XUM3 (EMBL:AL646074) (387 aa) fasta scores: E(): 1.1e-31, 36.16% id in 365 aa.
       0.463
tufA1
Elongation factor Tu; Similar to Escherichia coli elongation factor Tu SWALL:EFTU_ECOLI (SWALL:P02990) (393 aa) fasta scores: E(): 3.5e-122, 80.2% id in 394 aa.
      
 0.408
arcC
Carbamate kinase; Similar to Pseudomonas aeruginosa carbamate kinase ArcC or pa5173 SWALL:ARCC_PSEAE (SWALL:P13982) (310 aa) fasta scores: E(): 2.7e-94, 82.58% id in 310 aa, and to Escherichia coli carbamate kinase ArcC or b0521 SWALL:ARCC_ECOLI (SWALL:P37306) (297 aa) fasta scores: E(): 5.8e-48, 49.83% id in 299 aa.
      
 0.407
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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