STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL1741Hypothetical protein; No significant database matches. Very low and limited similarity to parts of Oryza sativa hypothetical 20.6 kDa protein osjnba0015i18.3 SWALL:Q8S7C0 (EMBL:AC090482) (191 aa) fasta scores: E(): 6.9, 51.72% id in 29 aa. (110 aa)    
Predicted Functional Partners:
arcD
Similar to Pseudomonas aeruginosa arginine/ornithine antiporter ArcD or pa5170 SWALL:ARCD_PSEAE (SWALL:P18275) (482 aa) fasta scores: E(): 5.3e-140, 78.58% id in 481 aa, and to Clostridium perfringens arginine/ornithine antiporter cpe0170 SWALL:ARCD_CLOPE (SWALL:Q46170) (478 aa) fasta scores: E(): 2.4e-89, 51.8% id in 471 aa.
     
 0.718
arcC
Carbamate kinase; Similar to Pseudomonas aeruginosa carbamate kinase ArcC or pa5173 SWALL:ARCC_PSEAE (SWALL:P13982) (310 aa) fasta scores: E(): 2.7e-94, 82.58% id in 310 aa, and to Escherichia coli carbamate kinase ArcC or b0521 SWALL:ARCC_ECOLI (SWALL:P37306) (297 aa) fasta scores: E(): 5.8e-48, 49.83% id in 299 aa.
     
 0.612
arcB
Ornithine carbamoyltransferase, catabolic; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
     
 0.606
arcA
Arginine deiminase; Similar to Pseudomonas aeruginosa arginine deiminase ArcA or pa5171 SWALL:ARCA_PSEAE (SWALL:P13981) (417 aa) fasta scores: E(): 2.5e-140, 79.36% id in 412 aa, and to Rhizobium etli arginine deiminase ArcA SWALL:ARCA_RHIET (SWALL:O31017) (409 aa) fasta scores: E(): 1.1e-102, 61.42% id in 407 aa.
     
 0.507
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.