STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL1790Putative sugar kinase (pseudogene); Pfam match to entry PF00370 FGGY, FGGY family of carbohydrate kinases, N-terminal domain, score 184.7, E-value 9.4e-53. (363 aa)    
Predicted Functional Partners:
fdhA
Similar to Pseudomonas putida glutathione-independent formaldehyde dehydrogenase FdhA SWALL:FADH_PSEPU (SWALL:P46154) (398 aa) fasta scores: E(): 1.2e-121, 80.9% id in 398 aa, and to Ralstonia solanacearum probable glutathione-independent formaldehyde dehydrogenase oxidoreductase protein rsp0053 or rs02028 SWALL:Q8XTQ3 (EMBL:AL646076) (398 aa) fasta scores: E(): 2e-142, 92.98% id in 399 aa.
  
     0.487
BPSL1793
Putative sugar-binding exported protein; Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu4320 or agr_l_1084 SWALL:Q8U7X9 (EMBL:AE009360) (303 aa) fasta scores: E(): 1e-69, 67.79% id in 295 aa, and to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB or RbsP or PrlB or b3751 SWALL:RBSB_ECOLI (SWALL:P02925) (296 aa) fasta scores: E(): 1.1e-20, 32.33% id in 300 aa.
 
    0.475
BPSL1791
Putative membrane protein; Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4322 or agr_l_1078 SWALL:Q8U7X7 (EMBL:AE009360) (327 aa) fasta scores: E(): 1.3e-63, 64.72% id in 309 aa, and to Escherichia coli, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or z5251 or ecs4692 SWALL:RBSC_ECO57 (SWALL:P04984) (321 aa) fasta scores: E(): 3.4e-43, 47.41% id in 310 aa. Note: this CDS is longer in its N-terminal region than most of its database matches.
  
    0.453
BPSL1792
Hypothetical protein; Low similarity to parts of Microbacterium ammoniaphilum hypothetical 58.7 kDa protein SWALL:P94909 (EMBL:X79027) (529 aa) fasta scores: E(): 5.6e-09, 33.58% id in 396 aa, and to Homo sapiens hypothetical protein dkfzp434d1812 SWALL:Q9H0L6 (EMBL:AL136745) (1170 aa) fasta scores: E(): 7.4e-07, 25.18% id in 552 aa. Note: Most of the database matches belong to eukaryotic entries.
       0.443
BPSS0253
Putative DNA-binding protein; Similar to Pasteurella multocida hypothetical protein pm1646 SWALL:Q9CKH2 (EMBL:AE006201) (317 aa) fasta scores: E(): 1.2e-59, 52.68% id in 317 aa, and to Bacillus halodurans transcriptional regulator bh0780 SWALL:Q9KER9 (EMBL:AP001509) (316 aa) fasta scores: E(): 1.7e-24, 29.83% id in 305 aa.
 
   
 0.418
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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