STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL1986Hypothetical protein; No significant database matches. (128 aa)    
Predicted Functional Partners:
BPSL1987
Conserved hypothetical protein; Similar to Escherichia coli, and Escherichia coli O157:H7 SirA protein or b3470 or z4844 or ecs4319 SWALL:SIRA_ECOLI (SWALL:P37618) (81 aa) fasta scores: E(): 0.00021, 31.88% id in 69 aa, and to Ralstonia solanacearum hypothetical protein rsc0810 or rs05012 SWALL:Q8Y180 (EMBL:AL646061) (75 aa) fasta scores: E(): 3e-20, 73.68% id in 76 aa; Belongs to the sulfur carrier protein TusA family.
       0.414
BPSL1985
Putative two component system, response regulator; Similar to Caulobacter crescentus DNA-binding response regulator cc3325 SWALL:Q9A379 (EMBL:AE005994) (236 aa) fasta scores: E(): 1.3e-36, 43.36% id in 226 aa, and to Rhizobium meliloti phosphate regulon transcriptional regulatory protein PhoB or r00515 or smc02140 SWALL:PHOB_RHIME (SWALL:Q52990) (227 aa) fasta scores: E(): 2.8e-20, 34.66% id in 225 aa.
       0.405
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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