Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
BPSL1985 | BPSL1986 | Putative two component system, response regulator; Similar to Caulobacter crescentus DNA-binding response regulator cc3325 SWALL:Q9A379 (EMBL:AE005994) (236 aa) fasta scores: E(): 1.3e-36, 43.36% id in 226 aa, and to Rhizobium meliloti phosphate regulon transcriptional regulatory protein PhoB or r00515 or smc02140 SWALL:PHOB_RHIME (SWALL:Q52990) (227 aa) fasta scores: E(): 2.8e-20, 34.66% id in 225 aa. | Hypothetical protein; No significant database matches. | 0.405 |
BPSL1986 | BPSL1985 | Hypothetical protein; No significant database matches. | Putative two component system, response regulator; Similar to Caulobacter crescentus DNA-binding response regulator cc3325 SWALL:Q9A379 (EMBL:AE005994) (236 aa) fasta scores: E(): 1.3e-36, 43.36% id in 226 aa, and to Rhizobium meliloti phosphate regulon transcriptional regulatory protein PhoB or r00515 or smc02140 SWALL:PHOB_RHIME (SWALL:Q52990) (227 aa) fasta scores: E(): 2.8e-20, 34.66% id in 225 aa. | 0.405 |
BPSL1986 | BPSL1987 | Hypothetical protein; No significant database matches. | Conserved hypothetical protein; Similar to Escherichia coli, and Escherichia coli O157:H7 SirA protein or b3470 or z4844 or ecs4319 SWALL:SIRA_ECOLI (SWALL:P37618) (81 aa) fasta scores: E(): 0.00021, 31.88% id in 69 aa, and to Ralstonia solanacearum hypothetical protein rsc0810 or rs05012 SWALL:Q8Y180 (EMBL:AL646061) (75 aa) fasta scores: E(): 3e-20, 73.68% id in 76 aa; Belongs to the sulfur carrier protein TusA family. | 0.414 |
BPSL1987 | BPSL1986 | Conserved hypothetical protein; Similar to Escherichia coli, and Escherichia coli O157:H7 SirA protein or b3470 or z4844 or ecs4319 SWALL:SIRA_ECOLI (SWALL:P37618) (81 aa) fasta scores: E(): 0.00021, 31.88% id in 69 aa, and to Ralstonia solanacearum hypothetical protein rsc0810 or rs05012 SWALL:Q8Y180 (EMBL:AL646061) (75 aa) fasta scores: E(): 3e-20, 73.68% id in 76 aa; Belongs to the sulfur carrier protein TusA family. | Hypothetical protein; No significant database matches. | 0.414 |