STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL1991Putative sugar ABC transport system, substrate-binding periplasmic protein; Similar to Rhizobium loti probable secreted solute binding protein mll1004 SWALL:Q98LI9 (EMBL:AP002996) (316 aa) fasta scores: E(): 5.6e-29, 32.74% id in 342 aa, and to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB or RbsP or PrlB or b3751 SWALL:RBSB_ECOLI (SWALL:P02925) (296 aa) fasta scores: E(): 3.8e-07, 24.81% id in 270 aa. (349 aa)    
Predicted Functional Partners:
BPSL1992
Similar to Rhizobium loti permease protein of sugar ABC transporter mll1003 SWALL:Q98LJ0 (EMBL:AP002996) (373 aa) fasta scores: E(): 1e-65, 52.86% id in 367 aa, and to Brucella melitensis sugar transport system permease protein bmei0664 SWALL:Q8YHY1 (EMBL:AE009508) (387 aa) fasta scores: E(): 5.9e-64, 52.39% id in 376 aa.
 
 0.992
BPSL1993
Similar to Brucella melitensis sugar transport ATP-binding protein bmei0665 SWALL:Q8YHY0 (EMBL:AE009508) (259 aa) fasta scores: E(): 1.3e-50, 58.55% id in 263 aa, and to Rhizobium loti ATP-binding protein of sugar ABC transporter mlr2442 SWALL:Q98IE2 (EMBL:AP002999) (264 aa) fasta scores: E(): 6.2e-50, 63.05% id in 249 aa.
 
 
 0.926
BPSL1994
Putative carbohydrate kinase; Similar to Ralstonia solanacearum probable transferase kinase protein rsc1240 or rs02748 SWALL:Q8Y005 (EMBL:AL646063) (650 aa) fasta scores: E(): 3.1e-139, 57.25% id in 655 aa, and N-trminal region to Bacillus subtilis protein IolC or e83c SWALL:IOLC_BACSU (SWALL:P42414) (325 aa) fasta scores: E(): 2.1e-17, 28.57% id in 343 aa.
 
  
 0.905
BPSL1995
Similar to Ralstonia solanacearum putative acetolactate synthase protein rsc1239 or rs02747 SWALL:Q8Y006 (EMBL:AL646063) (627 aa) fasta scores: E(): 4e-135, 62.88% id in 625 aa, and to Bacillus subtilis probable malonic semialdehyde oxidative decarboxylase IolD or e83d SWALL:IOLD_BACSU (SWALL:P42415) (580 aa) fasta scores: E(): 3.4e-43, 40.82% id in 583 aa, and to Spirulina platensis acetolactate synthase IlvY SWALL:ILVB_SPIPL (SWALL:P27868) (579 aa) fasta scores: E(): 3.1e-22, 28.51% id in 540 aa; Belongs to the TPP enzyme family.
 
  
 0.884
BPSL1997
Conserved hypothetical protein; Similar to Ralstonia solanacearum putative myo-inositol catabolism protein rsc1237 or rs02745 SWALL:Q8Y008 (EMBL:AL646063) (271 aa) fasta scores: E(): 1.6e-60, 60.83% id in 263 aa, and to Bacillus subtilis protein IolB or e83b SWALL:IOLB_BACSU (SWALL:P42413) (271 aa) fasta scores: E(): 2.3e-41, 46.61% id in 251 aa.
 
  
 0.882
BPSL1996
Putative amine catabolism-related protein; Similar to Yersinia pestis hypothetical protein ypo2586 SWALL:Q8ZDI2 (EMBL:AJ414152) (306 aa) fasta scores: E(): 3e-62, 56.94% id in 288 aa, and to Rhizobium meliloti rhizopine catabolism protein MocC SWALL:MOCC_RHIME (SWALL:P49304) (325 aa) fasta scores: E(): 1.1e-54, 50.85% id in 291 aa.
 
    0.874
BPSL1989
Putative oxidoreductase; Similar to Caulobacter crescentus myo-inositol 2-dehydrogenase cc1296 SWALL:Q9A8Q7 (EMBL:AE005804) (328 aa) fasta scores: E(): 2.1e-58, 49.54% id in 327 aa, and to Rhizobium meliloti myo-inositol 2-dehydrogenase IdhA or rb1194 or smb20899 SWALL:MI2D_RHIME (SWALL:O68965) (330 aa) fasta scores: E(): 1.1e-51, 46.64% id in 328 aa. Note: Also similar to the downstream CDS, BPSL1988 (346 aa) fasta scores: E(): 4.5e-27, 35.362% identity in 345 aa overlap.
 
    0.860
BPSL1990
Putative transcriptional regulatory protein; Similar to Ralstonia solanacearum hypothetical protein rsc1249 or rs02757 SWALL:Q8XZZ6 (EMBL:AL646063) (302 aa) fasta scores: E(): 1.1e-44, 47.2% id in 286 aa, and to Caulobacter crescentus sis domain protein cc1297 SWALL:Q9A8Q6 (EMBL:AE005804) (291 aa) fasta scores: E(): 1e-32, 35.88% id in 287 aa.
 
  
 0.848
BPSL2025
Putative two component regulatory system, sensor kinase; Similar to the C-terminal region of Escherichia coli sensor protein RcsC or b2218 SWALL:RCSC_ECOLI (SWALL:P14376) (949 aa) fasta scores: E(): 2e-37, 32.94% id in 513 aa, and of Salmonella typhi sensor protein RcsC or sty2496 SWALL:RCSC_SALTI (SWALL:Q56128) (948 aa) fasta scores: E(): 1.2e-35, 32.82% id in 521 aa.
   
 
 0.825
BPSS1940
Similar to Caulobacter crescentus sensory box histidine kinase/response regulator cc3225 SWALL:Q9A3H9 (EMBL:AE005986) (731 aa) fasta scores: E(): 9.5e-57, 35.17% id in 688 aa, and to Pseudomonas putida sensor histidine kinase/response regulator pp3651 SWALL:AAN69251 (EMBL:AE016787) (727 aa) fasta scores: E(): 6.1e-51, 33.19% id in 729 aa.
   
 
 0.825
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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