STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL2001Putative thioesterase; Similar to Pseudomonas aeruginosa hypothetical protein pa5185 SWALL:Q9HU04 (EMBL:AE004931) (147 aa) fasta scores: E(): 1.6e-34, 60.95% id in 146 aa, and to Mycobacterium tuberculosis hypothetical protein rv0163 or mt0172 or mtci28.03 SWALL:O07408 (EMBL:Z97050) (151 aa) fasta scores: E(): 4.2e-22, 45.32% id in 139 aa. (149 aa)    
Predicted Functional Partners:
BPSS1008
Putative polyketide synthase; N-terminal region is similar to the the N-terminal region of Bacillus subtilis putative polyketide synthase PksK SWALL:PKSK_BACSU (SWALL:P40803) (4447 aa) fasta scores: E(): 1.1e-167, 38.79% id in 3439 aa. Internal region is similar to an internal region of Pseudomonas fluorescens MmpIV protein SWALL:Q8RL72 (EMBL:AF318063) (6521 aa) fasta scores: E(): 2.8e-41, 32.83% id in 4069 aa.
  
 
 0.941
BPSS2329
Putative acyl transferase; Similar to internal regions of Streptomyces avermitilis modular polyketide synthase PteA1 SWALL:Q93H87 (EMBL:AB070949) (6048 aa) fasta scores: E(): 2e-14, 28.35% id in 529 aa, and to Streptomyces venezuelae type I polyketide synthase PikAI SWALL:Q9ZGI5 (EMBL:AF079138) (4613 aa) fasta scores: E(): 3e-13, 27.83% id in 521 aa.
  
 
 0.928
BPSS0306
Similar to Xanthomonas albilineans albicidin multifunctional polyketide-peptide synthase XabB SWALL:Q9AIT3 (EMBL:AF239749) (4801 aa) fasta scores: E(): 1.4e-123, 36.11% id in 3458 aa, and to Bacillus subtilis putative polyketide synthase PksM or PksY SWALL:PKSM_BACSU (SWALL:P40872) (4273 aa) fasta scores: E(): 2.3e-93, 36% id in 2861 aa.
  
 
 0.878
BPSS1009
Putative polyketide synthase; C-terminal region is similar to an internal region of Bacillus subtilis putative polyketide synthase Pksl or PksX or PksA or OutG SWALL:PKSL_BACSU (SWALL:Q05470) (4427 aa) fasta scores: E(): 3.4e-65, 39.49% id in 633 aa, and to Pseudomonas fluorescens MmpII protein SWALL:Q8RL74 (EMBL:AF318063) (2076 aa) fasta scores: E(): 6.5e-62, 38.92% id in 632 aa; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.878
BPSS1172
Putative non-ribosomal peptide synthase/polyketide synthase; Similar to Polyangium cellulosum polyketide synthase EpoC SWALL:Q9KIZ8 (EMBL:AF217189) (1832 aa) fasta scores: E(): 1.7e-90, 46.7% id in 576 aa, and to Polyangium cellulosum polyketide synthase EpoB SWALL:Q9L8C8 (EMBL:AF210843) (1832 aa) fasta scores: E(): 2.2e-90, 46.52% id in 576 aa, and to Stigmatella aurantiaca MtaD SWALL:Q9RFK8 (EMBL:AF188287) (3291 aa) fasta scores: E(): 2.5e-89, 48.97% id in 537 aa.
  
 
 0.878
BPSS1173
Putative non-ribosomal peptide/polyketide synthase protein; Similar to Streptomyces verticillus polyketide synthase BlmVIII SWALL:Q9FB25 (EMBL:AF210249) (1841 aa) fasta scores: E(): 9.9e-99, 37.09% id in 1143 aa, and to Streptomyces natalensis PimS4 protein Pims4 SWALL:Q9EWA3 (EMBL:AJ278573) (2024 aa) fasta scores: E(): 1.1e-79, 29.41% id in 1785 aa, and to Streptomyces avermitilis modular polyketide synthase PteA5 SWALL:Q93H83 (EMBL:AB070949) (3352 aa) fasta scores: E(): 1.2e-78, 30.65% id in 1579 aa.
  
 
 0.878
BPSL2229
Similar to Pseudomonas putida siderophore non-ribosomal peptide synthetase PpsD SWALL:Q9AKS6 (EMBL:AJ310530) (2246 aa) fasta scores: E(): 4.8e-102, 28.54% id in 2659 aa, and to the C-terminal region of Pseudomonas syringae syringomycin synthetase SyrE SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 1.5e-94, 27.02% id in 3648 aa.
  
 
 0.838
BPSS1269
Putative peptide synthase/polyketide synthase; Similar to C-terminus of Aphanizomenon ovalisporum peptide synthetase AoaB SWALL:AAM33468 (EMBL:AF395828) (1869 aa) fasta scores: E(): 5.4e-125, 35.68% id in 1841 aa, and to C-terminus of Stigmatella aurantiaca MtaD SWALL:Q9RFK8 (EMBL:AF188287) (3291 aa) fasta scores: E(): 7.3e-124, 29.54% id in 3368 aa.
  
 
 0.838
BPSL1998
Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraG or pa1070 SWALL:BRAG_PSEAE (SWALL:P21630) (233 aa) fasta scores: E(): 2.1e-19, 36.36% id in 220 aa, and to Brucella melitensis high-affinity branched-chain amino acid transport ATP-binding protein bmeii0065 SWALL:Q8YDV9 (EMBL:AE009645) (238 aa) fasta scores: E(): 3.4e-28, 45.29% id in 234 aa.
       0.782
BPSL1999
N-terminal region similar to Ralstonia solanacearum probable amino acid transport system permease lipoprotein transmembrane rsc1752 or rs02940 SWALL:Q8XYK6 (EMBL:AL646066) (440 aa) fasta scores: E(): 1.9e-34, 46.79% id in 421 aa, and C-terminal region similar to Ralstonia solanacearum probable amino-acid ATP-binding ABC transporter protein rsc1753 or rs02941 SWALL:Q8XYK5 (EMBL:AL646066) (266 aa) fasta scores: E(): 8.2e-34, 53.57% id in 252 aa, and to Escherichia coli, and Escherichia coli O157:H7 high-affinity branched-chain amino acid transport ATP-binding protein LivG or b3455 or z48 [...]
       0.782
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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