Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BPSL2007Putative membrane protein; Similar to Ralstonia solanacearum hypothetical protein rsc0805 or rs05564 SWALL:Q8Y185 (EMBL:AL646061) (409 aa) fasta scores: E(): 1.3e-25, 38.04% id in 552 aa, and to Pseudomonas aeruginosa hypothetical protein pa1412 SWALL:Q9I3T2 (EMBL:AE004570) (397 aa) fasta scores: E(): 2.8e-11, 30.25% id in 542 aa. Note: The similarities annotated comprise the N-terminal and the C-terminal region of this CDS and the database matches, leaving the central part, where the repeats are, with no similarities to any of the database matches. (564 aa)    
Predicted Functional Partners:
BPSL2008
Similar to Bacillus subtilis transcriptional regulatory protein GltR SWALL:GLTR_BACSU (SWALL:P94501) (296 aa) fasta scores: E(): 1.6e-32, 37.93% id in 290 aa, and to Ralstonia solanacearum probable transcription regulator protein rsc0804 or rs05024 SWALL:Q8Y186 (EMBL:AL646061) (302 aa) fasta scores: E(): 3.4e-55, 56.16% id in 292 aa. Note: This CDS is longer in its C-terminal region than most of its database matches; Belongs to the LysR transcriptional regulatory family.
       0.525
BPSL0115
Patatin-like phospholipase family protein; Poor database matches. Similar to Ralstonia solanacearum hypothetical protein rsc0013 or rs01835 SWALL:Q8Y3G7 (EMBL:AL646057) (297 aa) fasta scores: E(): 1.2e-82, 70.77% id in 284 aa, and to the C-terminal region of Caulobacter crescentus hypothetical protein CC3383 SWALL:Q9A323 (EMBL:AE005999) (353 aa) fasta scores: E(): 0.6, 24.21% id in 256 aa.
  
     0.494
BPSL3249
Similar to Ralstonia solanacearum putative outer membrane W signal peptide protein OmpW or Rsc3350 or Rs02625 SWALL:Q8XU43 (EMBL:AL646074) (241 aa) fasta scores: E(): 5.7e-11, 40.94% id in 276 aa, and to Escherichia coli outer membrane protein W precursor OmpW or b1256 SWALL:OMPW_ECOLI (SWALL:P21364) (212 aa) fasta scores: E(): 0.36, 24.54% id in 277 aa.
  
     0.467
BPSL1888
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp1080 or rs02587 SWALL:Q8XQY8 (EMBL:AL646082) (541 aa) fasta scores: E(): 1e-35, 34.76% id in 584 aa, and to Agrobacterium tumefaciens hypothetical protein atu1609 or agr_c_2962 SWALL:Q8UEZ4 (EMBL:AE009118) (579 aa) fasta scores: E(): 3.8e-06, 25.71% id in 599 aa.
  
     0.464
BPSL3416
Putative branched-chain amino acid ABC transporter periplasmic substrate binding protein; Similar to Ralstonia solanacearum putative substrate-binding periplasmic rsc3342 or rs02578 SWALL:Q8XU51 (EMBL:AL646074) (402 aa) fasta scores: E(): 8.7e-112, 72.56% id in 401 aa, and to Azoarcus evansii putative substrate binding protein SWALL:Q93FB9 (EMBL:AF320253) (391 aa) fasta scores: E(): 1.8e-19, 28.69% id in 359 aa.
  
     0.452
BPSS1768
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp1080 or rs02587 SWALL:Q8XQY8 (EMBL:AL646082) (541 aa) fasta scores: E(): 1.6e-38, 33.68% id in 576 aa, and to Rhizobium loti hypothetical protein mll7595 SWALL:Q985N8 (EMBL:AP003012) (589 aa) fasta scores: E(): 1.4e-28, 28.31% id in 611 aa.
  
     0.439
BPSL2193
Similar to Ralstonia solanacearum hypothetical protein rsc1355 or rs04637 SWALL:Q8XZP0 (EMBL:AL646064) (137 aa) fasta scores: E(): 1.1e-22, 54.96% id in 131 aa, and to Sulfolobus solfataricus hypothetical protein sso2192 SWALL:Q97WM2 (EMBL:AE006825) (276 aa) fasta scores: E(): 1.9e-09, 36.92% id in 130 aa.
  
     0.437
BPSS0085
Putative porin-related protein (fragment); Gene remnant. Similar to internal region of Burkholderia cepacia OpcP1 SWALL:Q45106 (EMBL:D63823) (361 aa) fasta scores: E(): 1.9e-05, 58.06% id in 31 aa, and Ralstonia solanacearum probable porin signal peptide protein rsc2108 or rs01496 SWALL:Q8XXK5 (EMBL:AL646068) (381 aa) fasta scores: E(): 0.00028, 61.29% id in 31 aa. Feature lacks translational stop and start codons.
  
     0.431
BPSL1547
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0773 or rs05081 SWALL:Q8Y1B7 (EMBL:AL646061) (740 aa) fasta scores: E(): 3e-79, 44.84% id in 814 aa, and to Yersinia pestis putative exported protein ypo3987 SWALL:Q8ZA33 (EMBL:AJ414160) (740 aa) fasta scores: E(): 2.1e-69, 39.63% id in 820 aa. Note: It contains a region from approx. residue 200 to approx. residue 350 with very little or no similarities to database entries.
  
     0.428
BPSL2494
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0929 or rs04485 SWALL:Q8Y0W4 (EMBL:AL646061) (151 aa) fasta scores: E(): 1.1e-29, 56.66% id in 150 aa.
  
     0.418
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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