STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL2134Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc1428 or rs05264 SWALL:Q8XZG7 (EMBL:AL646064) (313 aa) fasta scores: E(): 4.7e-60, 54.14% id in 314 aa, and to Caulobacter crescentus integral membrane protein cc0848 SWALL:Q9A9W3 (EMBL:AE005761) (312 aa) fasta scores: E(): 1.3e-47, 49.17% id in 303 aa. (322 aa)    
Predicted Functional Partners:
BPSL2783
Putative membrane protein; Similar to Klebsiella pneumoniae hypothetical protein in cps region SWALL:YC02_KLEPN (SWALL:Q48448) (209 aa) fasta scores: E(): 1.7e-10, 31.86% id in 182 aa, and to Ralstonia solanacearum probable transmembrane protein rsp1005 or rs02338 SWALL:Q8XR56 (EMBL:AL646082) (223 aa) fasta scores: E(): 3.1e-10, 34.4% id in 186 aa, and to Aeromonas hydrophila hypothetical 28.2 kDa protein SWALL:Q9X647 (EMBL:AF131869) (264 aa) fasta scores: E(): 5.5e-10, 37.68% id in 207 aa.
  
   0.594
BPSL3235
Similar to Ralstonia solanacearum hypothetical protein Rsc3094 or Rs00547 SWALL:Q8XUU1 (EMBL:AL646073) (264 aa) fasta scores: E(): 2.3e-38, 41.97% id in 274 aa.
  
     0.529
BPSL1629
Putative exported fimbria-related protein; Similar to Escherichia coli type-1 fimbrial protein, A chain precursor FimA or PilA or b4314 SWALL:FM1A_ECOLI (SWALL:P04128) (182 aa) fasta scores: E(): 4.9e-09, 35.32% id in 167 aa, and to Xylella fastidiosa fimbrial adhesin precursor xf0077 SWALL:Q9PH69 (EMBL:AE003862) (356 aa) fasta scores: E(): 3.5e-10, 34.14% id in 246 aa. Note: This CDS has no similarities to any database matches in its N-terminal region.
  
     0.488
BPSL1447
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein pa4874 SWALL:Q9HUT9 (EMBL:AE004901) (138 aa) fasta scores: E(): 5.3e-12, 60.24% id in 83 aa.
  
     0.459
BPSS0002
Putative integrase; Similar to Ralstonia solanacearum probable integrase/recombinase protein rsp1102 or rs02608 SWALL:Q8XQW6 (EMBL:AL646082) (323 aa) fasta scores: E(): 4.8e-34, 37.89% id in 314 aa, and to parts of Rhizobium loti integrase/recombinase mll6042 and mll5956 SWALL:Q981F2 (EMBL:AP003008) (332 aa) fasta scores: E(): 3e-06, 29.65% id in 172 aa; Belongs to the 'phage' integrase family.
  
     0.439
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.