STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimM16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (211 aa)    
Predicted Functional Partners:
trmD
tRNA(guanine-n(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
  
  
 0.988
rpsP
30S ribosomal protein S16; Similar to Escherichia coli, and Escherichia coli O157:H7 30S ribosomal protein S16 RpsP SWALL:RS16_ECOLI (SWALL:P02372) (82 aa) fasta scores: E(): 1.1e-15, 58.02% id in 81 aa, and to Ralstonia solanacearum 30S ribosomal protein S16 rsc0933 or rs04481 SWALL:RS16_RALSO (SWALL:Q8Y0W0) (84 aa) fasta scores: E(): 5.4e-26, 83.33% id in 84 aa; Belongs to the bacterial ribosomal protein bS16 family.
  
  
 0.976
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
 
 0.974
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
  
 0.970
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
  
 0.959
rpsF
Putative 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
  
 0.946
rpsB
30S ribosomal protein S2; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 30S ribosomal protein S2 RpsB or b0169 or c0204 or z0180 or ecs0171 SWALL:RS2_ECOLI (SWALL:P02351) (240 aa) fasta scores: E(): 4.9e-51, 56.01% id in 241 aa, and to Ralstonia solanacearum 30S ribosomal protein S2 rsc1404 or rs05288 SWALL:Q8XZJ1 (EMBL:AL646064) (247 aa) fasta scores: E(): 1.8e-79, 86.42% id in 243 aa; Belongs to the universal ribosomal protein uS2 family.
  
  
 0.940
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
  
 0.932
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
  
  
 0.930
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
  
 0.925
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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