Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BPSL2714 | pheT | BPSL2714 | BPSL1940 | Putative membrane protein; Similar to several including: Ralstonia solanacearum probable transmembrane protein rsc2426 or rs02683 SWALL:Q8XWP7 (EMBL:AL646070) (253 aa) fasta scores: E(): 5.2e-39, 49.4% id in 253 aa and to Bacillus subtilis hypothetical protein YjnA SWALL:O34578 (EMBL:AF015825) (254 aa) fasta scores: E(): 1.3e-28, 38.88% id in 252 aa. | Similar to Escherichia coli phenylalanyl-tRNA synthetase beta chain PheT or b1713 SWALL:SYFB_ECOLI (SWALL:P07395) (795 aa) fasta scores: E(): 3.2e-119, 41.84% id in 815 aa, and to Ralstonia solanacearum probable phenylalanyl-tRNA synthetase beta chain protein rsc1582 or rs05825 SWALL:Q8XZ24 (EMBL:AL646065) (809 aa) fasta scores: E(): 0, 67.53% id in 810 aa. | 0.461 |
pheT | BPSL2714 | BPSL1940 | BPSL2714 | Similar to Escherichia coli phenylalanyl-tRNA synthetase beta chain PheT or b1713 SWALL:SYFB_ECOLI (SWALL:P07395) (795 aa) fasta scores: E(): 3.2e-119, 41.84% id in 815 aa, and to Ralstonia solanacearum probable phenylalanyl-tRNA synthetase beta chain protein rsc1582 or rs05825 SWALL:Q8XZ24 (EMBL:AL646065) (809 aa) fasta scores: E(): 0, 67.53% id in 810 aa. | Putative membrane protein; Similar to several including: Ralstonia solanacearum probable transmembrane protein rsc2426 or rs02683 SWALL:Q8XWP7 (EMBL:AL646070) (253 aa) fasta scores: E(): 5.2e-39, 49.4% id in 253 aa and to Bacillus subtilis hypothetical protein YjnA SWALL:O34578 (EMBL:AF015825) (254 aa) fasta scores: E(): 1.3e-28, 38.88% id in 252 aa. | 0.461 |