STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL2926Similar to Ralstonia solanacearum putative transcription regulator protein rsc0479 or rs04416 SWALL:Q8Y257 (EMBL:AL646059) (314 aa) fasta scores: E(): 2.6e-70, 64.55% id in 316 aa, and to Rhizobium meliloti putative transcriptional regulator ra0049 or sma0097 SWALL:Q930Z5 (EMBL:AE007199) (313 aa) fasta scores: E(): 3.9e-27, 37.8% id in 328 aa; Belongs to the LysR transcriptional regulatory family. (316 aa)    
Predicted Functional Partners:
oxyR
Previously sequenced as Burkholderia pseudomallei oxidative stress regulatory protein OxyR SWALL:Q939D3 (EMBL:AY040244) (319 aa) fasta scores: E(): 7.7e-125, 100% id in 319 aa. Highly similar to Ralstonia solanacearum probable hydrogen peroxide-inducible genes activator transcription regulator protein oxyR or rsc2690 or rs00030 SWALL:Q8XVY5 (EMBL:AL646071) (317 aa) fasta scores: E(): 6.5e-94, 77.42% id in 319 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.685
BPSL1680
Putative LysR-family transcriptional regulatory protein; Similar to Escherichia coli transcriptional activator protein LysR or b2839 SWALL:LYSR_ECOLI (SWALL:P03030) (311 aa) fasta scores: E(): 1.7e-28, 35.95% id in 292 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa5085 SWALL:Q9HU98 (EMBL:AE004921) (318 aa) fasta scores: E(): 6.5e-30, 38.72% id in 297 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.628
BPSL2069
Similar to Escherichia coli putative transcriptional regulator AbgR or b1339 SWALL:ABGR_ECOLI (SWALL:P77744) (302 aa) fasta scores: E(): 6.1e-13, 24.73% id in 287 aa, and to Xanthomonas axonopodis transcriptional regulator YbhD or xac3476 SWALL:Q8PGY6 (EMBL:AE011995) (300 aa) fasta scores: E(): 2.8e-19, 32.46% id in 308 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.628
BPSL1923
Similar to Bacillus subtilis transcriptional regulatory protein GltC SWALL:GLTC_BACSU (SWALL:P20668) (300 aa) fasta scores: E(): 4.3e-19, 28.76% id in 299 aa, and to Ralstonia solanacearum probable transcription regulator transcription regulator protein rsc2537 or rs00708 SWALL:Q8XWD7 (EMBL:AL646070) (297 aa) fasta scores: E(): 8.5e-64, 59.45% id in 296 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.618
BPSS0155
Putative LysR-family transcriptional regulator; Similar to Escherichia coli transcriptional activator protein LysR or b2839 SWALL:LYSR_ECOLI (SWALL:P03030) (311 aa) fasta scores: E(): 1.7e-16, 34.95% id in 246 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa5085 SWALL:Q9HU98 (EMBL:AE004921) (318 aa) fasta scores: E(): 1.7e-30, 41.58% id in 291 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.598
BPSS2207
Similar to Ralstonia solanacearum probable transcriptional regulator protein rsp1571 or rs02127 SWALL:Q8XPR7 (EMBL:AL646085) (324 aa) fasta scores: E(): 4e-38, 37.17% id in 304 aa, and to Pseudomonas sp. putative transcriptional regulator ORF99 SWALL:Q936X4 (EMBL:U66917) (322 aa) fasta scores: E(): 4.8e-19, 34.25% id in 289 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.571
ilvR
Similar to Caulobacter crescentus isoleucine biosynthesis transcriptional activator IlvR or cc3045 SWALL:ILVR_CAUCR (SWALL:P52670) (296 aa) fasta scores: E(): 4.4e-49, 53.52% id in 312 aa, and to Ralstonia solanacearum probable transcription regulator protein rsc2411 or rs02707 SWALL:Q8XWR2 (EMBL:AL646070) (311 aa) fasta scores: E(): 2.7e-57, 61.93% id in 310 aa, and to Bacillus subtilis als operon regulatory protein AlsR SWALL:ALSR_BACSU (SWALL:Q04778) (302 aa) fasta scores: E(): 2.1e-30, 38.18% id in 309 aa.
  
     0.570
BPSL0387
Similar to Ralstonia solanacearum hypothetical protein rsc0297 or rs03264 SWALL:Q8Y2N8 (EMBL:AL646058) (85 aa) fasta scores: E(): 7.8e-19, 68.6% id in 86 aa. Possible alternative translational start sites.
  
     0.527
BPSL2008
Similar to Bacillus subtilis transcriptional regulatory protein GltR SWALL:GLTR_BACSU (SWALL:P94501) (296 aa) fasta scores: E(): 1.6e-32, 37.93% id in 290 aa, and to Ralstonia solanacearum probable transcription regulator protein rsc0804 or rs05024 SWALL:Q8Y186 (EMBL:AL646061) (302 aa) fasta scores: E(): 3.4e-55, 56.16% id in 292 aa. Note: This CDS is longer in its C-terminal region than most of its database matches; Belongs to the LysR transcriptional regulatory family.
  
     0.519
BPSS0920
Putative transposase (fragment); Gene remnant. Similar to internal regions of Nitrosomonas europaea ATCC 19718 integrase, catalytic core SWALL:Q82T33 (EMBL:BX321863) (204 aa) fasta scores: E(): 3.4e-08, 84.21% id in 38 aa, and Bacteriophage phiE125 TnpB SWALL:Q8W6R2 (EMBL:AF447491) (284 aa) fasta scores: E(): 4.5e-08, 84.21% id in 38 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.494
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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