Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0010Hypothetical protein; No significant database matches. (338 aa)    
Predicted Functional Partners:
BPSL1274
Hypothetical protein; No significant database matches.
  
     0.596
BPSS2156
Similar to Streptomyces coelicolor hypothetical protein sco6307 sco6307 or scif3.09C SWALL:Q93RT4 (EMBL:AL939127) (320 aa) fasta scores: E(): 2.6e-12, 36.18% id in 351 aa.
  
     0.555
BPSL3413
Hypothetical protein; Weakly similar to Ralstonia solanacearum probable amino-acid-binding periplasmic Rsc3329 or Rs02563 SWALL:Q8XU64 (EMBL:AL646074) (382 aa) fasta scores: E(): 1.4e-06, 27.41% id in 372 aa. Lies within a putative amino acid transport operon but does not show any other evidence of association with transport.
  
     0.475
BPSS1429
Hypothetical protein; No significant database matches.
  
     0.466
BPSS1654
Cytochrome P450; Similar to Rhodococcus sp. NCIMB 9784 cytochrome P450 Rhf p450rhF SWALL:Q8KU27 (EMBL:AF459424) (773 aa) fasta scores: E(): 8.5e-183, 62.83% id in 783 aa, and to Rhodococcus erythropolis cytochrome p450 116 ThcB or Cyp116 SWALL:THCB_RHOER (SWALL:P43492) (436 aa) fasta scores: E(): 1.1e-88, 56.08% id in 419 aa.
  
     0.451
BPSL0778
Similar to Ralstonia solanacearum hypothetical protein rsc0553 or rs04912 SWALL:Q8Y1Y4 (EMBL:AL646059) (208 aa) fasta scores: E(): 4.5e-48, 60.51% id in 195 aa; alternative start site at codon 11.
  
     0.431
BPSS0350
Similar to Anabaena sp. hypothetical protein all2220 SWALL:Q8YUW1 (EMBL:AP003588) (186 aa) fasta scores: E(): 2.9e-29, 47.54% id in 183 aa, and to Pseudomonas aeruginosa hypothetical protein pa2804 SWALL:Q9I039 (EMBL:AE004707) (193 aa) fasta scores: E(): 1.4e-25, 49.71% id in 175 aa.
  
     0.418
BPSL0565
Hypothetical protein; No significant database matches.
  
     0.416
BPSS0011
Similar to Escherichia coli probable tartrate dehydrogenase YeaU or b1800 SWALL:TTUC_ECOLI (SWALL:P76251) (361 aa) fasta scores: E(): 2.2e-106, 70.95% id in 358 aa, and to Ralstonia solanacearum probable tartrate dehydrogenase oxidoreductase protein TtuC or rsp1612 or rs02169 SWALL:Q8XPM6 (EMBL:AL646086) (361 aa) fasta scores: E(): 5.3e-113, 75% id in 360 aa.
       0.406
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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