STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0015Putative membrane protein; No significant database matches. (154 aa)    
Predicted Functional Partners:
BPSS0016
Similar to Ralstonia solanacearum putative transmembrane protein rsp1060 or rs02397 SWALL:Q8XR08 (EMBL:AL646082) (377 aa) fasta scores: E(): 2.7e-87, 62.29% id in 366 aa, and to Rhizobium loti hypothetical protein mlr2398 SWALL:Q98IH7 (EMBL:AP002999) (390 aa) fasta scores: E(): 3.1e-65, 49.2% id in 378 aa.
       0.594
BPSS0017
Similar to Rhizobium meliloti D-beta-hydroxybutyrate dehydrogenase BdhA or rb1136 or smb21010 SWALL:BDHA_RHIME (SWALL:O86034) (258 aa) fasta scores: E(): 2.1e-28, 40.84% id in 262 aa, and to Ralstonia solanacearum probable dehydrogenase/reductase oxidoreductase protein rsp1059 or rs02396 SWALL:Q8XR09 (EMBL:AL646082) (261 aa) fasta scores: E(): 7.1e-76, 83.14% id in 261 aa. Note: Also similar to BPSS0354 (268 aa) fasta scores: E(): 1.6e-83, 99.615% identity in 260 aa overlap; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.436
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.