STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0185Similar to Yersinia pestis hypothetical protein ypo0511a or y3662 SWALL:Q8ZII6 (EMBL:AJ414143) (121 aa) fasta scores: E(): 2e-08, 40.17% id in 117 aa. (124 aa)    
Predicted Functional Partners:
BPSS0184
Hypothetical protein; No significant database matches.
 
     0.918
BPSS0182
Conserved hypothetical protein; Similar in its full length to Yersinia pestis hypothetical y3665 SWALL:AAM87213 (EMBL:AE013969) (739 aa) fasta scores: E(): 6.7e-20, 24.39% id in 779 aa, C-terminal region to Yersinia pestis hypothetical protein ypo0509 SWALL:Q8ZII9 (EMBL:AJ414143) (540 aa) fasta scores: E(): 3.1e-09, 23.14% id in 566 aa, and N-terminal region to Rhizobium loti hypothetical protein mlr2351 SWALL:Q98IL3 (EMBL:AP002999) (367 aa) fasta scores: E(): 0.00016, 29.11% id in 261 aa.
 
  
 0.872
BPSS0183
Conserved hypothetical protein; Similar to the C-terminal region of Anabaena sp. hypothetical protein all3114 SWALL:Q8YSH1 (EMBL:AP003591) (576 aa) fasta scores: E(): 3.3e-14, 26.19% id in 313 aa, and to the full length of Synechocystis sp. hypothetical protein sll1446 SWALL:P74206 (EMBL:D90913) (320 aa) fasta scores: E(): 6.2e-10, 24.76% id in 323 aa.
 
     0.817
BPSS0525
Hypothetical protein; No significant database matches to the full length CDS. N-terminal region is similar to Yersinia pestis hypothetical protein ypo0508 SWALL:Q8ZIJ0 (EMBL:AJ414143) (190 aa) fasta scores: E(): 4.9e-08, 30.6% id in 183 aa. Internal region is similar to Yersinia pestis hypothetical protein ypo0509 SWALL:Q8ZII9 (EMBL:AJ414143) (540 aa) fasta scores: E(): 4.2e-21, 24.13% id in 547 aa. C-terminal region is similar to to Yersinia pestis hypothetical protein ypo0510 SWALL:Q8ZII8 (EMBL:AJ414143) (367 aa) fasta scores: E(): 0.00034, 18.62% id in 247 aa.
 
  
 0.802
BPSS1504
Putative exported protein; Similar over its C-terminal region to Chlorobium tepidum pentapeptide repeat family protein ct1045 SWALL:AAM72278 (EMBL:AE012867) (549 aa) fasta scores: E(): 1.5e-08, 32.65% id in 346 aa, and to Caulobacter crescentus pentapeptide repeat family protein cc0587 SWALL:Q9AAL0 (EMBL:AE005733) (371 aa) fasta scores: E(): 2.2e-08, 32.08% id in 321 aa.
 
  
 0.748
BPSS0526
Hypothetical protein; Weakly similar to Chlorobium tepidum pentapeptide repeat family protein CT0918 SWALL:AAM72153 (EMBL:AE012857) (382 aa) fasta scores: E(): 0.06, 19.69% id in 325 aa.
 
     0.730
BPSS1505
Hypothetical protein; N-terminal region is weakly similar to Synechocystis sp. hypothetical protein SLR1819 SWALL:YI19_SYNY3 (SWALL:P73709) (331 aa) fasta scores: E(): 1.1e-15, 28.8% id in 309 aa.
 
     0.709
BPSS0166
LysR family regulatory protein; Similar to Pseudomonas aeruginosa transcriptional regulator for exotoxin A production PtxR or pa2258 SWALL:PTXR_PSEAE (SWALL:P72131) (312 aa) fasta scores: E(): 1.3e-42, 42.06% id in 290 aa, and to Salmonella typhi possible LysR-family transcriptional regulator sty3037 SWALL:Q8Z482 (EMBL:AL627276) (310 aa) fasta scores: E(): 4.1e-25, 30.84% id in 308 aa; Belongs to the LysR transcriptional regulatory family.
      
 0.579
BPSS0181
Similar to Yersinia pestis hypothetical protein ypo2725 SWALL:Q8ZD67 (EMBL:AJ414153) (921 aa) fasta scores: E(): 4.7e-87, 45.51% id in 580 aa, and to Shigella flexneri Rhs-family protein sf0265 SWALL:AAN41925 (EMBL:AE015061) (737 aa) fasta scores: E(): 2.4e-74, 46.15% id in 546 aa.
 
   
 0.442
BPSS1510
Putative membrane protein; Similar over its N-terminal region to Ralstonia solanacearum probable transmembrane protein rsp0739 or rs01969 SWALL:Q8XRU2 (EMBL:AL646080) (263 aa) fasta scores: E(): 1.3e-06, 34.83% id in 155 aa, and to Yersinia pestis putative membrane protein ypo1468 or ypo0975 or y2703 or y3366 SWALL:Q8XF18 (EMBL:AJ414148) (228 aa) fasta scores: E(): 0.047, 28.94% id in 190 aa.
 
     0.419
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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