STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0216Putative membrane protein; Similar to Rhizobium loti transmembrane efflux protein mll5686 SWALL:Q98B85 (EMBL:AP003007) (502 aa) fasta scores: E(): 3.1e-40, 32.99% id in 491 aa, and to Streptomyces glaucescens tetracenomycin C resistance and export protein TcmA SWALL:TCMA_STRGA (SWALL:P39886) (538 aa) fasta scores: E(): 1.7e-37, 31.08% id in 518 aa. Note: This CDS is longer in its N-terminal region than most of its database matches. (545 aa)    
Predicted Functional Partners:
BPSL1493
Putative membrane protein; Similar to Ralstonia solanacearum putative multidrug resistance-like transmembrane protein rsc1473 or rs03834 SWALL:Q8XZC8 (EMBL:AL646064) (517 aa) fasta scores: E(): 2.3e-40, 31.05% id in 512 aa, and to Xanthomonas campestris multidrug resistance membrane translocase xcc1400 SWALL:AAM40698 (EMBL:AE012239) (526 aa) fasta scores: E(): 3.5e-24, 24.95% id in 521 aa.
  
     0.751
BPSS0217
Similar to Agrobacterium tumefaciens transcriptional regulator, LysR family atu4021 or agr_l_1663 SWALL:Q8U8R9 (EMBL:AE009333) (309 aa) fasta scores: E(): 2.6e-32, 37.2% id in 293 aa, and to Yersinia pestis probable LysR-family transcriptional regulator ypo1929 SWALL:Q8ZF22 (EMBL:AJ414150) (292 aa) fasta scores: E(): 1.6e-23, 31.59% id in 288 aa; Belongs to the LysR transcriptional regulatory family.
       0.533
BPSS0541
HlyD family secretion protein; Similar to Escherichia coli multidrug resistance protein A EmrA SWALL:EMRA_ECOLI (SWALL:P27303) (390 aa) fasta scores: E(): 9e-46, 40.51% id in 390 aa, and to Xanthomonas campestris multidrug resistance efflux pump xcc1399 SWALL:AAM40697 (EMBL:AE012239) (397 aa) fasta scores: E(): 5.4e-50, 44.44% id in 387 aa. Almost identical to BPSS1347, 99.742% identity (99.742% ungapped) in 388 aa overlap.
 
 
 0.495
BPSS1347
Similar to Neisseria gonorrhoeae efflux pump protein FarA SWALL:Q9RQ30 (EMBL:AF132909) (394 aa) fasta scores: E(): 6.5e-48, 48.46% id in 359 aa, and to Ralstonia solanacearum probable multidrug resistance A EmrA or rsc1293 or rs02806 SWALL:Q8XZV2 (EMBL:AL646063) (428 aa) fasta scores: E(): 6e-57, 47.76% id in 402 aa, and to Xanthomonas campestris multidrug resistance efflux pump PmrA or xcc1399 SWALL:AAM40697 (EMBL:AE012239) (397 aa) fasta scores: E(): 1.1e-49, 44.22% id in 398 aa.
 
 
 0.494
BPSL2020
HlyD family secretion protein; Similar to Escherichia coli multidrug resistance protein K EmrK or b2368 SWALL:EMRK_ECOLI (SWALL:P52599) (387 aa) fasta scores: E(): 1.7e-18, 31.65% id in 357 aa, and to Rhizobium meliloti hypothetical protein rb1406 or smb20699 SWALL:Q92TT9 (EMBL:AL603647) (365 aa) fasta scores: E(): 5.4e-33, 38.71% id in 372 aa, and to Pseudomonas putida TrpB trpB SWALL:Q8RPR5 (EMBL:AF360362) (353 aa) fasta scores: E(): 3.2e-32, 38.75% id in 338 aa. Note: This CDS is longer in its N-terminal region than most of its database matches.
 
 
 0.486
emrA
Similar to Escherichia coli multidrug resistance protein A EmrA or b2685 SWALL:EMRA_ECOLI (SWALL:P27303) (390 aa) fasta scores: E(): 1e-62, 49.74% id in 390 aa, and to Ralstonia solanacearum probable multidrug resistance A EmrA or rsc1293 or rs02806 SWALL:Q8XZV2 (EMBL:AL646063) (428 aa) fasta scores: E(): 1.2e-87, 63.48% id in 408 aa.
 
 
 0.471
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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